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hisat2: 2.1.0 -> 2.2.1
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20c8945467
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@ -1,16 +1,18 @@
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{stdenv, fetchurl, unzip, which, python, perl}:
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{stdenv, fetchFromGitHub, unzip, which, python3, perl}:
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stdenv.mkDerivation rec {
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pname = "hisat2";
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version = "2.1.0";
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version = "2.2.1";
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src = fetchurl {
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url = "ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-${version}-source.zip";
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sha256 = "10g73sdf6vqqfhhd92hliw7bbpkb8v4pp5012r5l21zws7p7d8l9";
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src = fetchFromGitHub {
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owner = "DaehwanKimLab";
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repo = "hisat2";
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rev = "v${version}";
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sha256 = "0lmzdhzjkvxw7n5w40pbv5fgzd4cz0f9pxczswn3d4cr0k10k754";
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};
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nativeBuildInputs = [ unzip which ];
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buildInputs = [ python perl ];
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buildInputs = [ python3 perl ];
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installPhase = ''
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mkdir -p $out/bin
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@ -30,12 +32,6 @@ stdenv.mkDerivation rec {
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hisat2_extract_snps_haplotypes_VCF.py \
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hisat2_extract_splice_sites.py \
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hisat2_simulate_reads.py \
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hisatgenotype_build_genome.py \
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hisatgenotype_extract_reads.py \
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hisatgenotype_extract_vars.py \
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hisatgenotype_hla_cyp.py \
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hisatgenotype_locus.py \
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hisatgenotype.py \
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$out/bin
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'';
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