pythonPackages.scikit-bio: init at 0.5.4

This commit is contained in:
Chris Ostrouchov 2018-10-10 21:21:58 -04:00 committed by Frederik Rietdijk
parent 0f8ccbf259
commit 4f25a13861
2 changed files with 57 additions and 0 deletions

View file

@ -0,0 +1,55 @@
{ stdenv
, buildPythonPackage
, fetchPypi
, cython
, lockfile
, cachecontrol
, decorator
, ipython
, matplotlib
, natsort
, numpy
, pandas
, scipy
, hdmedians
, scikitlearn
, pytest
, coverage
, python
, isPy3k
}:
buildPythonPackage rec {
version = "0.5.4";
pname = "scikit-bio";
disabled = !isPy3k;
src = fetchPypi {
inherit pname version;
sha256 = "3243f1995ef24643c09ff4d9391a79528aadd8232e5aa5d66c38d7b2e0c92f24";
};
buildInputs = [ cython ];
checkInputs = [ coverage ];
propagatedBuildInputs = [ lockfile cachecontrol decorator ipython matplotlib natsort numpy pandas scipy hdmedians scikitlearn ];
# remove on when version > 0.5.4
postPatch = ''
sed -i "s/numpy >= 1.9.2, < 1.14.0/numpy/" setup.py
sed -i "s/pandas >= 0.19.2, < 0.23.0/pandas/" setup.py
'';
# cython package not included for tests
doCheck = false;
checkPhase = ''
${python.interpreter} -m skbio.test
'';
meta = with stdenv.lib; {
homepage = http://scikit-bio.org/;
description = "Data structures, algorithms and educational resources for bioinformatics";
license = licenses.bsd3;
maintainers = [ maintainers.costrouc ];
};
}

View file

@ -11715,6 +11715,8 @@ in {
inherit (pkgs) gfortran glibcLocales;
};
scikit-bio = callPackage ../development/python-modules/scikit-bio { };
scp = callPackage ../development/python-modules/scp {};
scripttest = buildPythonPackage rec {