From a8fe9e7affb27e803b5cfaa134019b028b25b8f0 Mon Sep 17 00:00:00 2001
From: Justin Bedo <cu@cua0.org>
Date: Tue, 11 Feb 2020 10:10:19 +1100
Subject: [PATCH] delly: 0.8.1 -> 0.8.2

Backported patch required for htslib 1.10.2
---
 .../science/biology/delly/default.nix           | 17 +++++++++++++----
 1 file changed, 13 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/science/biology/delly/default.nix b/pkgs/applications/science/biology/delly/default.nix
index bfdf5a1bb17e..a6c45f8aa44e 100644
--- a/pkgs/applications/science/biology/delly/default.nix
+++ b/pkgs/applications/science/biology/delly/default.nix
@@ -1,16 +1,25 @@
-{ stdenv, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }:
+{ stdenv, fetchpatch, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }:
 
-stdenv.mkDerivation rec {
+let
+  htslibPatch = fetchpatch {
+    url = "https://github.com/dellytools/delly/commit/0e5c710b0c5ea790bb39699d4cbd49cf4fb86f14.diff";
+    sha256 = "09bz1qqvzhdzm99hf9zgrv80kq9jlr1m2mdvx96p2hk5lpnbdl7y";
+    excludes = [ "src/htslib" ];
+  };
+
+in stdenv.mkDerivation rec {
   pname = "delly";
-  version = "0.8.1";
+  version = "0.8.2";
 
   src = fetchFromGitHub {
       owner = "dellytools";
       repo = pname;
       rev = "v${version}";
-      sha256 = "18gm86j1g1k4z1cjv2m5v9rsl1xqs2w3dhwcsnzx2mhkrvmlc4i1";
+      sha256 = "14bkmixz7737xj192ww96s3a20zc7xs7r04db8avw3ggi3i1s1cs";
   };
 
+  patches = [ htslibPatch ];
+
   buildInputs = [ zlib htslib bzip2 lzma ncurses boost ];
 
   EBROOTHTSLIB = htslib;