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Merge pull request #140766 from fabaff/bump-gcsfs

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Sandro 2021-10-07 11:36:42 +02:00 committed by GitHub
parent b5b042b580 4c5d2704f1
commit 7e38e25f92
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GPG key ID: 4AEE18F83AFDEB23
7 changed files with 53 additions and 40 deletions
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38
pkgs/development/python-modules/clifford/default.nix
View file

@ -1,9 +1,7 @@
{ lib
, buildPythonPackage
, fetchPypi
, fetchpatch
, isPy27
, future
, pythonOlder
, h5py
, ipython
, numba
@ -15,25 +13,16 @@
buildPythonPackage rec {
pname = "clifford";
version = "1.3.1";
disabled = isPy27;
version = "1.4.0";
disabled = pythonOlder "3.5";
src = fetchPypi {
inherit pname version;
sha256 = "ade11b20d0631dfc9c2f18ce0149f1e61e4baf114108b27cfd68e5c1619ecc0c";
sha256 = "sha256-eVE8FrD0YHoRreY9CrNb8v4v4KrG83ZU0oFz+V+p+Q0=";
};
patches = [
(fetchpatch {
# Compatibility with h5py 3.
# Will be included in the next releasse after 1.3.1
url = "https://github.com/pygae/clifford/pull/388/commits/955d141662c68d3d61aa50a162b39e656684c208.patch";
sha256 = "0pkpwnk0kfdxsbzsxqlqh8kgif17l5has0mg31g3kyp8lncj89b1";
})
];
propagatedBuildInputs = [
future
h5py
numba
numpy
@ -55,15 +44,24 @@ buildPythonPackage rec {
"veryslow"
"test_algebra_initialisation"
"test_cga"
"test_estimate_rotor_sequential[random_sphere]"
"test_grade_projection"
"test_multiple_grade_projection"
"test_inverse"
"test_inv_g4"
];
disabledTestPaths = [
# Disable failing tests
"test_g3c_tools.py"
"test_multivector_inverse.py"
];
pythonImportsCheck = [ "clifford" ];
meta = with lib; {
description = "Numerical Geometric Algebra Module";
homepage = "https://clifford.readthedocs.io";
license = licenses.bsd3;
maintainers = [ maintainers.costrouc ];
# many TypeError's in tests
broken = true;
maintainers = with maintainers; [ costrouc ];
};
}

35
pkgs/development/python-modules/dask-jobqueue/default.nix
View file

@ -1,10 +1,11 @@
{ lib
, buildPythonPackage
, fetchPypi
, dask
, distributed
, docrep
, pytest
, fetchPypi
, pytest-asyncio
, pytestCheckHook
}:
buildPythonPackage rec {
@ -16,19 +17,33 @@ buildPythonPackage rec {
sha256 = "682d7cc0e6b319b6ab83a7a898680c12e9c77ddc77df380b40041290f55d4e79";
};
checkInputs = [ pytest ];
propagatedBuildInputs = [ dask distributed docrep ];
propagatedBuildInputs = [
dask
distributed
docrep
];
# do not run entire tests suite (requires slurm, sge, etc.)
checkPhase = ''
py.test dask_jobqueue/tests/test_jobqueue_core.py
'';
checkInputs = [
pytest-asyncio
pytestCheckHook
];
pytestFlagsArray = [
# Do not run entire tests suite (requires slurm, sge, etc.)
"dask_jobqueue/tests/test_jobqueue_core.py"
];
disabledTests = [
"test_import_scheduler_options_from_config"
"test_security"
];
pythonImportsCheck = [ "dask_jobqueue" ];
meta = with lib; {
homepage = "https://github.com/dask/dask-jobqueue";
description = "Deploy Dask on job schedulers like PBS, SLURM, and SGE";
license = licenses.bsd3;
maintainers = [ maintainers.costrouc ];
broken = true;
maintainers = with maintainers; [ costrouc ];
};
}

4
pkgs/development/python-modules/dask/default.nix
View file

@ -22,7 +22,7 @@
buildPythonPackage rec {
pname = "dask";
version = "2021.09.0";
version = "2021.09.1";
format = "setuptools";
disabled = pythonOlder "3.7";
@ -31,7 +31,7 @@ buildPythonPackage rec {
owner = "dask";
repo = pname;
rev = version;
sha256 = "sha256-Gb6eQ5Hebx3mBNGvgB5yvM4dPsIxJl9ka++yYC/Zf7Q=";
sha256 = "sha256-+UkbXbWV5R/QtVb5rWm/5SA+IoWsIfBciL3vg138jkc=";
};
propagatedBuildInputs = [

4
pkgs/development/python-modules/distributed/default.nix
View file

@ -19,13 +19,13 @@
buildPythonPackage rec {
pname = "distributed";
version = "2021.9.0";
version = "2021.9.1";
disabled = pythonOlder "3.6";
# get full repository need conftest.py to run tests
src = fetchPypi {
inherit pname version;
sha256 = "sha256-IiKc0rJYODCtGC9AAOkjbww/VG7PdfrqJ32IHU9xWbo=";
sha256 = "sha256-9N65ap2+9bBK0DCrkF3+1xuJPXmjaL1Xh7ISaLTtX/g=";
};
propagatedBuildInputs = [

4
pkgs/development/python-modules/fsspec/default.nix
View file

@ -14,14 +14,14 @@
buildPythonPackage rec {
pname = "fsspec";
version = "2021.08.1";
version = "2021.10.0";
disabled = pythonOlder "3.6";
src = fetchFromGitHub {
owner = "intake";
repo = "filesystem_spec";
rev = version;
sha256 = "0xxzcp69div1sy975x82k754snbsksyqr73h6jiasdxj8wka49s0";
sha256 = "sha256-zvOSenK63jFC9vMLsuZT8P9NCXGdkYAB5AxvptROKes=";
};
propagatedBuildInputs = [

4
pkgs/development/python-modules/gcsfs/default.nix
View file

@ -17,14 +17,14 @@
buildPythonPackage rec {
pname = "gcsfs";
version = "2021.08.1";
version = "2021.10.0";
disabled = pythonOlder "3.6";
src = fetchFromGitHub {
owner = "dask";
repo = pname;
rev = version;
sha256 = "sha256-SPQcSdEEbU791oqkvuwmvyvQ6HglvoWKMi5SdnRcEZI=";
sha256 = "sha256-GDVIENtNpo8cg7pplOgoDMVguZmxoUUSs860WNfhmfM=";
};
propagatedBuildInputs = [

4
pkgs/development/python-modules/s3fs/default.nix
View file

@ -8,11 +8,11 @@
buildPythonPackage rec {
pname = "s3fs";
version = "2021.8.1";
version = "2021.10.0";
src = fetchPypi {
inherit pname version;
sha256 = "0zwy2fr95s5wzrr2iwbayjh9xh421p6wf0m75szl7rw930v1kb2y";
sha256 = "sha256-mSdMmP5b6pu954GQxBrb0bEghyLLKtSGd6aPhHPwOV0=";
};
buildInputs = [