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megahit: fir gcc-13 build failure

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Without the change build fails on `master` against `gcc-13` as
https://hydra.nixos.org/build/247673319:

    In file included from /build/source/src/main_local_assemble.cpp:27:
    /build/source/src/localasm/local_assemble.h:31:3: error: 'uint32_t' does not name a type
       31 |   uint32_t kmin{11};
          |   ^~~~~~~~
    /build/source/src/localasm/local_assemble.h:1:1: note: 'uint32_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
      +++ |+#include <cstdint>
This commit is contained in:
Sergei Trofimovich 2024-02-10 10:26:43 +00:00
parent f5bf3f09f3
commit 90a5d1b931
1 changed files with 11 additions and 1 deletions
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12
pkgs/applications/science/biology/megahit/default.nix
View file

@ -1,4 +1,4 @@
{ lib, stdenv, fetchFromGitHub, cmake, zlib }:
{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake, zlib }:
stdenv.mkDerivation rec {
pname = "megahit";
@ -11,6 +11,16 @@ stdenv.mkDerivation rec {
sha256 = "1r5d9nkdmgjsbrpj43q9hy3s8jwsabaz3ji561v18hy47v58923c";
};
patches = [
# Fix gcc-13 build failure:
# https://github.com/voutcn/megahit/pull/366
(fetchpatch {
name = "gcc-13.patch";
url = "https://github.com/voutcn/megahit/commit/4cb2f793503087163bda8592222f105f27e33e66.patch";
hash = "sha256-b5mhzif+OPcMjmg+BnaUc5CB6Acn/KTBOJEw+WYEhbs=";
})
];
nativeBuildInputs = [ cmake ];
buildInputs = [ zlib ];