mirror of
https://github.com/SebastianWendel/nixpkgs.git
synced 2024-09-21 04:49:01 +02:00
commit
ab78a72cd0
70
pkgs/applications/science/biology/nest/default.nix
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70
pkgs/applications/science/biology/nest/default.nix
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{ lib
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, stdenv
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, fetchFromGitHub
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, testers
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, cmake
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, gsl
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, libtool
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, mpi
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, nest
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, pkg-config
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, python3
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, readline
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, autoPatchelfHook
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, withPython ? false
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, withMpi ? false
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}:
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stdenv.mkDerivation rec {
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pname = "nest";
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version = "3.3";
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src = fetchFromGitHub {
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owner = "nest";
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repo = "nest-simulator";
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rev = "v${version}";
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sha256 = "sha256-wmn5LOOHlSuyPdV6O6v7j10dxdcvqpym6MfveZdL+dU=";
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};
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postPatch = ''
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patchShebangs cmake/CheckFiles/check_return_val.sh
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# fix PyNEST installation path
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# it expects CMAKE_INSTALL_LIBDIR to be relative
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substituteInPlace cmake/ProcessOptions.cmake \
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--replace "\''${CMAKE_INSTALL_LIBDIR}/python" "lib/python"
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'';
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nativeBuildInputs = [
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cmake
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pkg-config
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autoPatchelfHook
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];
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buildInputs = [
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gsl
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readline
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libtool # libltdl
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] ++ lib.optionals withPython [
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python3
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python3.pkgs.cython
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] ++ lib.optional withMpi mpi;
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cmakeFlags = [
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"-Dwith-python=${if withPython then "ON" else "OFF"}"
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"-Dwith-mpi=${if withMpi then "ON" else "OFF"}"
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"-Dwith-openmp=${if stdenv.isDarwin then "OFF" else "ON"}"
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];
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passthru.tests.version = testers.testVersion {
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package = nest;
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command = "nest --version";
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};
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meta = with lib; {
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description = "NEST is a command line tool for simulating neural networks";
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homepage = "https://www.nest-simulator.org/";
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license = licenses.gpl2;
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maintainers = with maintainers; [ jiegec ];
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platforms = platforms.unix;
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};
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}
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@ -36343,6 +36343,10 @@ with pkgs;
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n3 = callPackage ../applications/science/biology/N3 { };
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n3 = callPackage ../applications/science/biology/N3 { };
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nest = callPackage ../applications/science/biology/nest { };
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nest-mpi = callPackage ../applications/science/biology/nest { withMpi = true; };
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neuron = callPackage ../applications/science/biology/neuron { python = null; };
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neuron = callPackage ../applications/science/biology/neuron { python = null; };
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neuron-mpi = neuron.override {useMpi = true; };
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neuron-mpi = neuron.override {useMpi = true; };
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@ -6302,6 +6302,8 @@ self: super: with self; {
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nessclient = callPackage ../development/python-modules/nessclient { };
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nessclient = callPackage ../development/python-modules/nessclient { };
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nest = toPythonModule(pkgs.nest-mpi.override { withPython = true; python3 = python; });
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nest-asyncio = callPackage ../development/python-modules/nest-asyncio { };
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nest-asyncio = callPackage ../development/python-modules/nest-asyncio { };
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nested-lookup = callPackage ../development/python-modules/nested-lookup { };
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nested-lookup = callPackage ../development/python-modules/nested-lookup { };
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