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bpp-core: init at 2.4.1

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This commit is contained in:
Ben Darwin 2020-03-09 16:55:14 -04:00
parent b87096c7fb
commit adc7b4c979
2 changed files with 38 additions and 0 deletions
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36
pkgs/development/libraries/science/biology/bpp-core/default.nix Normal file
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@ -0,0 +1,36 @@
{ stdenv, fetchFromGitHub, cmake }:
stdenv.mkDerivation rec {
pname = "bpp-core";
version = "2.4.1";
src = fetchFromGitHub { owner = "BioPP";
repo = pname;
rev = "v${version}";
sha256 = "0ma2cl677l7s0n5sffh66cy9lxp5wycm50f121g8rx85p95vkgwv";
};
nativeBuildInputs = [ cmake ];
preCheck = ''
export LD_LIBRARY_PATH=$(pwd)/src
'';
postFixup = ''
substituteInPlace $out/lib/cmake/bpp-core/bpp-core-targets.cmake \
--replace 'set(_IMPORT_PREFIX' '#set(_IMPORT_PREFIX'
'';
# prevents cmake from exporting incorrect INTERFACE_INCLUDE_DIRECTORIES
# of form /nix/store/.../nix/store/.../include,
# probably due to relative vs absolute path issue
doCheck = !stdenv.isDarwin;
meta = with stdenv.lib; {
homepage = "http://biopp.univ-montp2.fr/wiki/index.php/Main_Page";
changelog = "https://github.com/BioPP/bpp-core/blob/master/ChangeLog";
description = "C++ bioinformatics libraries and tools";
maintainers = with maintainers; [ bcdarwin ];
license = licenses.cecill20;
};
}

2
pkgs/top-level/all-packages.nix
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@ -24390,6 +24390,8 @@ in
inherit (darwin.apple_sdk.frameworks) ApplicationServices;
};
bpp-core = callPackage ../development/libraries/science/biology/bpp-core { };
cd-hit = callPackage ../applications/science/biology/cd-hit { };
cmtk = callPackage ../applications/science/biology/cmtk { };