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Samtools: 1.13 -> 1.17

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Changelogs:
 - https://github.com/samtools/samtools/releases/tag/1.14
 - https://github.com/samtools/samtools/releases/tag/1.15
 - https://github.com/samtools/samtools/releases/tag/1.15.1
 - https://github.com/samtools/samtools/releases/tag/1.16
 - https://github.com/samtools/samtools/releases/tag/1.16.1
 - https://github.com/samtools/samtools/releases/tag/1.17
This commit is contained in:
Bruno Bzeznik 2023-04-12 12:00:25 +02:00
parent e7c857571a
commit d69d242b7b
1 changed files with 2 additions and 11 deletions
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13
pkgs/applications/science/biology/samtools/default.nix
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@ -2,22 +2,13 @@
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
pname = "samtools"; pname = "samtools";
version = "1.13"; version = "1.17";
src = fetchurl { src = fetchurl {
url = "https://github.com/samtools/samtools/releases/download/${version}/${pname}-${version}.tar.bz2"; url = "https://github.com/samtools/samtools/releases/download/${version}/${pname}-${version}.tar.bz2";
sha256 = "sha256-YWyi4FHMgAmh6cAc/Yx8r4twkW3f9m87dpFAeUZfjGA="; sha256 = "sha256-Ot85C2KCGf1kCPFGAqTEqpDmPhizldrXIqtRlDiipyk";
}; };
patches = [
# Pull upstream patch for ncurses-6.3 support
(fetchpatch {
name = "ncurses-6.3.patch";
url = "https://github.com/samtools/samtools/commit/396ef20eb0854d6b223c3223b60bb7efe42301f7.patch";
sha256 = "sha256-p0l9ymXK9nqL2w8EytbW+qeaI7dD86IQgIVxacBj838=";
})
];
# tests require `bgzip` from the htslib package # tests require `bgzip` from the htslib package
nativeCheckInputs = [ htslib ]; nativeCheckInputs = [ htslib ];