mmseqs2: init at 14-7e284

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natsukium 2022-10-30 06:53:28 +00:00
parent f38a1f04d1
commit ed7511ad02
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2 changed files with 54 additions and 0 deletions

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@ -0,0 +1,50 @@
{ lib
, stdenv
, fetchFromGitHub
, cmake
, xxd
, perl
, installShellFiles
, enableAvx2 ? stdenv.hostPlatform.avx2Support
, enableSse4_1 ? stdenv.hostPlatform.sse4_1Support
, enableMpi ? false
, mpi
, openmp
, zlib
, bzip2
}:
stdenv.mkDerivation rec {
pname = "mmseqs2";
version = "14-7e284";
src = fetchFromGitHub {
owner = "soedinglab";
repo = pname;
rev = version;
sha256 = "sha256-pVryZGblgMEqJl5M20CHxav269yGY6Y4ci+Gxt6SHOU=";
};
nativeBuildInputs = [ cmake xxd perl installShellFiles ];
cmakeFlags =
lib.optional enableAvx2 "-DHAVE_AVX2=1"
++ lib.optional enableSse4_1 "-DHAVE_SSE4_1=1"
++ lib.optional enableMpi "-DHAVE_MPI=1";
buildInputs =
lib.optionals stdenv.cc.isClang [ openmp zlib bzip2 ]
++ lib.optional enableMpi mpi;
postInstall = ''
installShellCompletion --bash --cmd mmseqs $out/util/bash-completion.sh
rm -r $out/util/
'';
meta = with lib; {
description = "Ultra fast and sensitive sequence search and clustering suite";
homepage = "https://mmseqs.com/";
license = licenses.gpl3;
maintainers = with maintainers; [ natsukium ];
platforms = platforms.unix;
};
}

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@ -35165,6 +35165,10 @@ with pkgs;
minimap2 = callPackage ../applications/science/biology/minimap2 { };
mmseqs2 = callPackage ../applications/science/biology/mmseqs2 {
inherit (llvmPackages) openmp;
};
mosdepth = callPackage ../applications/science/biology/mosdepth { };
niftyreg = callPackage ../applications/science/biology/niftyreg { };