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5073 commits

Author SHA1 Message Date
Bobby Rong 77f92d23c7
Merge pull request #137608 from lopsided98/qgroundcontrol-update 
qgroundcontrol: 4.1.3 -> 4.1.4
 2021-09-16 14:18:28 +08:00
Felix Buehler 64bac8e874 quantum-espresso: switch to fetchFromGitLab 2021-09-15 23:13:57 +02:00
github-actions[bot] 1c625bf844
Merge staging-next into staging 2021-09-15 18:01:59 +00:00
Dmitry Kalinkin d8ed39b309
Merge pull request #135525 from veprbl/pr/open_memstream_fmemopen_darwin_fix 
Add implemetations of open_memstream/fmemopen to be used on BSDs
 2021-09-15 11:49:55 -04:00
Dmitry Kalinkin 84f408f206
Merge pull request #136016 from veprbl/pr/root_6_24_04 
root: 6.24.02 -> 6.24.06
 2021-09-15 11:35:07 -04:00
Tomoya Otabi 1e9bd43214 blast: 2.11.0 -> 2.12.0 2021-09-15 15:33:44 +00:00
github-actions[bot] 24a34e5706
Merge staging-next into staging 2021-09-15 12:01:34 +00:00
Michael Raskin 47eaf6727b
Merge pull request #137876 from r-ryantm/auto-update/opensmt 
opensmt: 2.1.0 -> 2.1.1
 2021-09-15 09:03:33 +00:00
R. RyanTM 7bf7c9b92b bowtie: 1.3.0 -> 1.3.1 2021-09-15 07:35:44 +00:00
github-actions[bot] 636ebe3a72
Merge staging-next into staging 2021-09-15 06:01:54 +00:00
Justin Bedő 9c4f65db4b
Merge pull request #137884 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.26.0 -> 2.26.2
 2021-09-15 04:59:06 +00:00
R. RyanTM e676fdcb90 picard-tools: 2.26.0 -> 2.26.2 2021-09-14 19:53:25 +00:00
R. RyanTM 1c9cbe8a05 opensmt: 2.1.0 -> 2.1.1 2021-09-14 18:44:37 +00:00
github-actions[bot] 95f24a8a57
Merge staging-next into staging 2021-09-14 18:01:40 +00:00
R. RyanTM 504529d628 horizon-eda: 2.0.0 -> 2.1.0 2021-09-14 10:46:32 +00:00
github-actions[bot] 04e48fbe4f
Merge staging-next into staging 2021-09-13 18:01:51 +00:00
adisbladis fcf5397793
Merge pull request #135905 from dukc/secondDmd2097 
D compiler update
 2021-09-13 11:36:55 -05:00
Ben Wolsieffer 03111112cc qgroundcontrol: 4.1.3 -> 4.1.4 2021-09-13 00:11:37 -04:00
github-actions[bot] dfd1161f35
Merge staging-next into staging 2021-09-13 00:02:22 +00:00
Sandro 11e504567d
Merge pull request #137454 from r-ryantm/auto-update/MAVProxy 
mavproxy: 1.8.41 -> 1.8.42
 2021-09-13 00:26:51 +02:00
github-actions[bot] fef6f602e6
Merge staging-next into staging 2021-09-12 18:01:50 +00:00
Daniël de Kok 6f2ce2a65e treewide: remove danieldk as maintainer from a set of packages 
I currently do not have much time to work on nixpkgs. Remove
myself as a maintainer from a bunch of packages to avoid that
people are waiting on me for a review.
 2021-09-12 14:42:12 +00:00
Sandro 83eef43893
Merge pull request #135906 from yl3dy/xoscope 
xoscope: 2.0 -> 2.3
 2021-09-12 16:15:41 +02:00
Sandro Jäckel e4a49641ae
openems: fix eval 2021-09-12 14:45:44 +02:00
R. RyanTM 2464f7ae0a mavproxy: 1.8.41 -> 1.8.42 2021-09-12 00:36:50 +00:00
github-actions[bot] d370d9ee99
Merge staging-next into staging 2021-09-11 18:01:51 +00:00
Sandro 22d08e62d9
Merge pull request #137382 from Xitian9/geogebra 2021-09-11 18:33:09 +02:00
Sandro 790559422e
Merge pull request #136823 from r-ryantm/auto-update/MAVProxy 2021-09-11 18:08:34 +02:00
Sandro 205c2ada66
Merge pull request #136967 from bzizou/obitools 2021-09-11 16:27:18 +02:00
Stephen Morgan 28b5133cce geogebra: 5-0-644-0 -> 5-0-662-0 2021-09-11 23:49:13 +10:00
github-actions[bot] 6188f2aeeb
Merge staging-next into staging 2021-09-11 06:01:28 +00:00
Guillaume Girol 1065a41d8d
Merge pull request #136369 from veprbl/pr/root5_gcc10_fix 
root5: fix for gcc10
 2021-09-10 19:54:29 +00:00
Hunter Jones bc19f8dd1e kstars: 3.5.3 -> 3.5.4 2021-09-07 13:04:31 -05:00
Bruno Bzeznik 3bd1b0ed0d obitools3: 3.0.0-beta14 -> 3.0.1b11 2021-09-07 09:38:41 +02:00
R. RyanTM a7277dd058 mavproxy: 1.8.40 -> 1.8.41 2021-09-06 00:37:54 +00:00
Emery Hemingway 323c503cba mosdepth: convert to buildNimPackage 2021-09-05 11:20:02 +02:00
Dmitry Kalinkin 0ec2acf51f
root: build with -Dimt=ON 2021-09-03 12:41:16 -04:00
Dmitry Kalinkin 95b2d74bc5
root: re-enable unvendored LLVM 2021-09-03 12:41:16 -04:00
Dmitry Kalinkin aedfb59c87
root: 6.24.02 -> 6.24.06 2021-09-03 12:41:04 -04:00
Markus Kowalewski 25ebbde3e1
sherpa: move gfortran to nativeBuildInputs 2021-09-03 13:33:32 +02:00
Markus Kowalewski 01ba299e53
elmerfem: move gfortran to nativeBuildInputs 2021-09-03 13:33:32 +02:00
Markus Kowalewski 9259691d58
dl-poly-classic: move gfortran to nativeBuildInputs 2021-09-03 13:33:32 +02:00
Markus Kowalewski 35a17a0cfe
scilab: move gfortran to nativeBuildInputs 2021-09-03 13:33:32 +02:00
Markus Kowalewski 74443bc786
jags: move gfortran to nativeBuildInputs 2021-09-03 13:33:31 +02:00
Markus Kowalewski eabbf45b60
csdp: move gfortran to nativeBuildInputs 2021-09-03 13:33:31 +02:00
Markus Kowalewski d5c38a0d5c
siesta: move gfortran to nativeBuildInputs 2021-09-03 13:33:31 +02:00
Markus Kowalewski 9eb814fd96
quantum-espresso: move gfortran to nativeBuildInputs 2021-09-03 13:33:31 +02:00
Markus Kowalewski eecadd3f3b
openmolcas: move gfortran to nativeBuildInputs 2021-09-03 13:33:31 +02:00
Dmitry Kalinkin 0a312a356c
root5: fix for gcc10 2021-09-01 07:14:56 -04:00
Ate Eskola b2a39efa57 sambamba 0.8.0 -> 0.8.1 2021-08-31 12:37:49 +03:00
Michael Raskin df3f3ccc6d
Merge pull request #136250 from collares/sage-networkx 
sage: adapt tests for networkx 2.6
 2021-08-31 07:52:29 +00:00
Mauricio Collares 7194273c77 sage: adapt tests for networkx 2.6 2021-08-30 22:43:24 -03:00
schotts-fired 9ec4fb0cd1 R: add memory profiling compile option 2021-08-30 18:24:42 +02:00
davidak fe2d3b56e7
Merge pull request #136014 from veprbl/pr/snakemake_6_7_0 
snakemake: 6.6.1 -> 6.7.0
 2021-08-29 10:54:01 +02:00
Dmitry Kalinkin b8c5c06aab
snakemake: 6.6.1 -> 6.7.0 2021-08-28 02:18:38 -04:00
Diep Pham ac0b44b1ee
dcmtk: support darwin platform (#136005) 2021-08-28 02:00:18 -04:00
Alexander Kiselyov accd81c1b6 xoscope: fixed buildInputs 2021-08-27 17:49:54 +03:00
Alexander Kiselyov 27dcb4bd31 xoscope: 2.0 -> 2.3 2021-08-26 22:21:17 +03:00
davidak 1b78608c69
Merge pull request #135516 from bzizou/stacks 
stacks: Changed license to gpl3Plus
 2021-08-26 03:50:48 +02:00
Justin Bedo b1b57ec04e
fastp: 0.20.1 -> 0.22.0 2021-08-25 09:52:07 +10:00
Sandro 73ad08e512
Merge pull request #135481 from kzvi/lean-update 
lean: 3.31.0 -> 3.32.1
 2021-08-25 00:43:28 +02:00
Dmitry Kalinkin 9c8f6efc55
xfitter: enable WITH_YAML support on darwin 2021-08-24 18:21:41 -04:00
Ryan Mulligan 8c2e2ffe95
Merge pull request #135212 from r-ryantm/auto-update/stacks 
stacks: 2.55 -> 2.59
 2021-08-24 09:03:17 -07:00
Bruno Bzeznik a240cd9f4f stacks: Changed license to gpl3Plus 2021-08-24 09:47:24 +02:00
Ryan Mulligan 997f4452a4
Merge pull request #135255 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.25.7 -> 2.26.0
 2021-08-23 20:56:38 -07:00
kzvi befe89f3d7 lean: 3.31.0 -> 3.32.1 2021-08-23 15:43:00 -07:00
davidak d18866b1c2 nasc: 0.7.5 -> 0.8.0 2021-08-23 23:23:52 +02:00
Artturi f2f1718aae
Merge pull request #135404 from r-ryantm/auto-update/workcraft 2021-08-23 17:28:09 +03:00
Artturi 55fdaafe15
Merge pull request #135398 from r-ryantm/auto-update/verifast 
verifast: 19.12 -> 21.04
 2021-08-23 17:25:35 +03:00
R. RyanTM 6b086631c6 workcraft: 3.3.2 -> 3.3.5 2021-08-23 08:01:40 +00:00
R. RyanTM a73fc504b7 verifast: 19.12 -> 21.04 2021-08-23 07:29:27 +00:00
Sandro 00f31216e0
Merge pull request #130396 from collares/sage-9.4 
sage: 9.3 -> 9.4
 2021-08-22 21:26:12 +02:00
Sandro 607fea187f
Merge pull request #135262 from shnarazk/cadical-141 
cadical: 1.3.0 -> 1.4.1
 2021-08-22 20:01:59 +02:00
Sandro 354afc6ecd
Merge pull request #135285 from Mic92/fix-homepages 2021-08-22 18:30:31 +02:00
Bjørn Forsman 7f6cb5a226 eagle: put the desktop icon where it can be found 
Apparently $out/share/icons/ doesn't work anymore, but
$out/share/pixmaps/ do.
 2021-08-22 17:12:24 +02:00
Jörg Thalheim 11e5c3ac4b bowtie: fix homepage 2021-08-22 16:08:28 +02:00
Mauricio Collares 46c3703ec1 sage: 9.3 -> 9.4 2021-08-22 09:53:12 -03:00
Mauricio Collares 9be264795c pynac: import segfault fix 2021-08-22 09:53:12 -03:00
Mauricio Collares b565d30c47 maxima: 5.44.0 -> 5.45.0 2021-08-22 09:53:08 -03:00
Narazaki, Shuji 960ddb6f8f cadical: 1.3.0 -> 1.4.1 2021-08-22 20:46:34 +09:00
R. RyanTM 742cd80071 picard-tools: 2.25.7 -> 2.26.0 2021-08-22 10:47:38 +00:00
Michael Raskin fbfc876625
Merge pull request #135241 from r-ryantm/auto-update/opensmt 
opensmt: 2.0.1 -> 2.1.0
 2021-08-22 10:03:57 +00:00
R. RyanTM 3760bcfd58 opensmt: 2.0.1 -> 2.1.0 2021-08-22 09:30:15 +00:00
R. RyanTM 67c1256ddd stacks: 2.55 -> 2.59 2021-08-22 07:08:39 +00:00
Sandro b2573f352e
Merge pull request #134578 from smancill/phase-hooks-use-strings 
treewide: ensure pre/post phase hooks are strings
 2021-08-21 14:49:30 +02:00
Sandro Jäckel 026fb18487
ginac: switch to pname + version, cleanup 2021-08-21 11:20:15 +02:00
Sebastián Mancilla 8f94a33b38 treewide: ensure pre/post phase hooks are strings 
Some derivations use lib.optional or lib.optionals when setting pre/post
phase hooks. Ensure the proper lib.optionalString is used.
 2021-08-20 19:08:42 -04:00
Sandro a9f66e941d
Merge pull request #134390 from smancill/colpack-darwin 
colpack: refactor builder and build on darwin
 2021-08-20 23:58:11 +02:00
Tom Repetti 1387ce732d openroad: init at 2.0 2021-08-20 10:16:03 -04:00
Sebastián Mancilla 50062cc371 colpack: refactor builder and build on darwin 
- Use autoreconfHook and set flags with configureFlags.
- Only enable OpenMP on Linux, so it can be built on Darwin.
- Do not install .la file. Other distros also remove them.
- Do not build examples.
- Install example sources into a proper location.
- Fixed license.
 2021-08-19 15:51:23 -04:00
Sandro ac9f41a782
Merge pull request #134393 from smancill/bump-lp-solve 
lp_solve: 5.5.2.5 -> 5.5.2.11
 2021-08-19 21:36:59 +02:00
Sandro 33a0810405
Merge pull request #134720 from cab404/pymole-2.5.0 
pymol: 2.3.0 -> 2.5.0
 2021-08-19 19:51:09 +02:00
Zhenya Vinogradov 6714723bfa sage: fix icon location in the kernel definition 
The icon location is incorrect, `doc` directory exists inside `src`
directory, but not on the top level.
 2021-08-19 12:20:35 +03:00
Vladimir Serov 8992ae0cff
pymol: 2.3.0 -> 2.5.0 2021-08-19 10:16:38 +03:00
davidak f2b906617d
Merge pull request #134361 from Stunkymonkey/why3-phases 
why3: deprecate phases
 2021-08-19 04:06:56 +02:00
Sebastián Mancilla 514c8569aa lp_solve: 5.5.2.5 -> 5.5.2.11 
- Use the generic builder and override build and install phases instead
  of using buildCommand and missing phases and hooks, like fixup.

- Fix build on Darwin by using the proper build script (ccc.osx).

  - Add cctools to build inputs because ccc.osx uses the libtool
    command.

  - The install_name of the library is not set so fix it with
    fixDarwinDylibNames.

- Install headers into the expected location $out/include/lpsolve
  instead of $out/include. This follows what other distro do.
 2021-08-17 23:20:47 -04:00
Ryan Mulligan ad59a67ec0
Merge pull request #134444 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.25.1 -> 2.25.7
 2021-08-17 16:47:31 -07:00
Artturi 8ba3c63144
Merge pull request #133998 from r-ryantm/auto-update/wxmaxima 
wxmaxima: 21.02.0 -> 21.05.2
 2021-08-17 23:00:21 +03:00
Gabriel Ebner 65cafb6030
Merge pull request #134474 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 3.19.0 -> 3.20.1
 2021-08-17 21:32:08 +02:00
Artturi 4f36420d07
Merge pull request #134045 from r-ryantm/auto-update/minimap2 
minimap2: 2.17 -> 2.22
 2021-08-17 22:22:47 +03:00