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6642 commits

Author SHA1 Message Date
Martin Weinelt cf7f4393f3
Merge pull request #193494 from NixOS/staging-next 2022-10-11 01:12:59 +02:00
Alexis Praga 2ce78bd571 gatk: add java and python to PATH 
gatk is actually a python script that starts either the local or spark
.jar file according to a fixed setup.
In the initial commit, neither java nor python were present in PATH.
 2022-10-10 23:06:01 +02:00
github-actions[bot] 8972888c55
Merge master into staging-next 2022-10-09 12:01:31 +00:00
Sergei Trofimovich 7c0859b7d5
Merge pull request #194691 from amjoseph-nixpkgs/pr/xlibsWrapper/pcb 
pcb: use xorg.* packages directly instead of xlibsWrapper
 2022-10-09 10:07:29 +01:00
github-actions[bot] 8d6fbd7341
Merge master into staging-next 2022-10-06 12:01:31 +00:00
R. Ryantm cdfcbf552e simgrid: 3.31 -> 3.32 2022-10-06 15:54:46 +08:00
Adam Joseph 30b0c8fec9 pcb: use xorg.* packages directly instead of xlibsWrapper 
As recommended by https://github.com/NixOS/nixpkgs/issues/194054

Built outputs (`x86-linux`) are identical except for the `pcb` binary, which was
manually reviewed with `vbindiff` to confirm that the only differences were
self-$out path references.
 2022-10-05 20:07:54 -07:00
github-actions[bot] 939050602c
Merge master into staging-next 2022-10-05 18:07:32 +00:00
R. Ryantm 68a8e9aa62 jmol: 14.32.75 -> 14.32.76 2022-10-05 04:43:26 +00:00
Martin Weinelt 253ca4957d Merge remote-tracking branch 'origin/master' into staging-next 2022-10-05 00:44:16 +02:00
markuskowa c17f8f9e76
Merge pull request #194421 from sheepforce/avogadro2 
avogadro2: 1.95.1 -> 1.97.0
 2022-10-04 17:09:20 +02:00
Phillip Seeber b070c222d1 avogadro2: 1.95.1 -> 1.97.0 2022-10-04 16:34:10 +02:00
Phillip Seeber c75b4ee2f0 cp2k: 9.1.0 -> 2022.2 2022-10-04 15:42:45 +02:00
Sandro 83928b1d5e
Merge pull request #193165 from pmiddend/crystfel-wrap-program-fix 
crystfel-headless: fix wrapProgram dependency
 2022-10-04 10:44:48 +02:00
R. Ryantm 052662fab4 librepcb: 0.1.6 -> 0.1.7 2022-10-03 16:29:32 -05:00
Sandro 718d7b8540
Merge pull request #192277 from swflint/add-readstat-pyreadstat 2022-10-03 23:01:07 +02:00
Samuel W. Flint 35d5dd7989 readstat: init at 1.1.8 
The readstat package allows for reading and manipulating
SAS/Stata/SPSS data files.  This can be useful for interacting and
interoperating with datasets distributed in these formats.
 2022-10-03 15:11:30 -05:00
Dmitry Kalinkin 846f382e4b
Merge pull request #192660 from samlich/master 
pymol: use Qt instead of Tk; fixes #192555
 2022-10-03 12:45:25 -04:00
R. Ryantm 1085ad554f verilator: 4.224 -> 4.226 2022-10-03 10:24:21 -05:00
github-actions[bot] a46be8f23d
Merge master into staging-next 2022-10-03 12:01:27 +00:00
Markus Kowalewski 4d6abfa6b4
octopus: 11.4 -> 12.0 2022-10-03 11:12:28 +02:00
github-actions[bot] 25043f0f28
Merge master into staging-next 2022-10-01 12:01:27 +00:00
Christian Kögler 3bcb621a8d
Merge pull request #191613 from r-ryantm/auto-update/cbmc 
cbmc: 5.65.1 -> 5.67.0
 2022-10-01 09:56:47 +02:00
github-actions[bot] e1d2f74dee
Merge master into staging-next 2022-09-30 18:03:29 +00:00
José Romildo Malaquias e78c23cf5b
Merge pull request #193248 from romildo/upd.generic-updater 
generic-updater: more flexible with name, pname, version and attr path, and cleanups
 2022-09-30 09:19:21 -03:00
R. Ryantm 119b1e2fd7 cbmc: 5.65.1 -> 5.67.0 2022-09-30 10:33:04 +00:00
github-actions[bot] f29cec4450
Merge master into staging-next 2022-09-30 06:22:32 +00:00
Theodore Ni 2d3705b141
root: mark broken on aarch64 2022-09-29 17:06:14 -07:00
github-actions[bot] 9c14978f84
Merge master into staging-next 2022-09-29 12:01:25 +00:00
Vladimír Čunát 8ba120420f
Merge #191339: staging-next 2022-09-15 2022-09-29 09:16:47 +02:00
Sandro 6a01ce12ff
Merge pull request #188718 from wegank/pagsuite-init 2022-09-29 00:40:20 +02:00
github-actions[bot] f18d801779
Merge staging-next into staging 2022-09-28 18:05:53 +00:00
Weijia Wang 428cdfb609 pagsuite: init at 1.80 2022-09-28 19:51:05 +02:00
Martin Weinelt 7da8d25d87 Merge remote-tracking branch 'origin/master' into staging-next 2022-09-28 17:15:11 +02:00
Vladimír Čunát 7ddee326c2
gromacs*: fixup paths in .pc files 2022-09-28 16:48:34 +02:00
polygon 5700835116 siril: 1.0.3 -> 1.0.5 2022-09-28 09:37:11 -05:00
Jonas Heinrich 563cdec4eb
Merge pull request #193168 from r-ryantm/auto-update/delly 
delly: 1.1.3 -> 1.1.5
 2022-09-28 10:08:58 +02:00
José Romildo 01510c7ff3 treewide: no need to pass pname, version and attrPath to update scripts based on generic-updater 2022-09-27 23:41:53 -03:00
github-actions[bot] d6a1c7033e
Merge staging-next into staging 2022-09-28 00:06:37 +00:00
github-actions[bot] 70776ac218
Merge master into staging-next 2022-09-28 00:06:02 +00:00
R. Ryantm f28b6e5468 snakemake: 7.14.1 -> 7.14.2 2022-09-27 19:16:23 -04:00
Artturi 1c1c182814
Merge pull request #192851 from Artturin/treewides1 2022-09-28 00:50:06 +03:00
R. Ryantm ddf9f1800a delly: 1.1.3 -> 1.1.5 2022-09-27 11:26:09 +00:00
Philipp Middendorf f893f28019 crystfel-headless: fix wrapProgram dependency 2022-09-27 12:53:25 +02:00
Vladimír Čunát 85d3dce182
Merge branch 'master' into staging-next 2022-09-27 08:20:58 +02:00
R. Ryantm fe2504c61b snakemake: 7.14.0 -> 7.14.1 2022-09-26 23:13:22 -04:00
github-actions[bot] 59a37c822b
Merge master into staging-next 2022-09-26 18:01:53 +00:00
Artturin 0734f54ef2 treewide: move pkg-config, autoreconfHook, intltool to nativeBuildInputs 
found with nixpkgs-lint
 2022-09-26 17:53:26 +03:00
Timo Kaufmann 62228ccc67
Merge pull request #192961 from r-ryantm/auto-update/jmol 
jmol: 14.32.74 -> 14.32.75
 2022-09-26 14:33:40 +02:00
Frederik Rietdijk de57d754a0 Merge master into staging-next 2022-09-26 09:31:22 +02:00