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85799 commits

Author SHA1 Message Date
Jörg Thalheim 188fcc1eb5
ferm: 2.3 -> 2.3.1 2017-01-08 23:40:40 +01:00
Will Dietz 2afcf34281 elfutils: Update website and URL to new sourceware location. 2017-01-08 16:30:05 -06:00
Will Dietz 157b216852 elfutils: 0.165 -> 0.168 2017-01-08 16:07:43 -06:00
Vladimír Čunát 936bc23b41
ed: avoid the useless rebuild due to #21752 2017-01-08 22:17:18 +01:00
Peter Simons 6d58ab2edf jailbreak-cabal: ghc-HEAD needs version 1.3.2 due to API changes in Cabal 
https://github.com/peti/jailbreak-cabal/issues/12
 2017-01-08 21:11:18 +01:00
Peter Simons dd0d71727a git-annex: fix build 2017-01-08 21:11:18 +01:00
Peter Simons 667c4e4925 hackage-packages.nix: automatic Haskell package set update 
This update was generated by hackage2nix v2.0.4-7-g48fad11 from Hackage revision
47c259fc33.
 2017-01-08 21:11:17 +01:00
Peter Simons 9729a8d015 haskell-esqueleto: keep version 2.4.x around so that we can still build git-annex 2017-01-08 21:11:17 +01:00
Jörg Thalheim c302d4a02f Merge pull request #21510 from peterhoeg/u/peruse 
peruse: 1.1 -> 1.2
 2017-01-08 20:51:36 +01:00
Moritz Ulrich efe05f9d42
notmuch: 0.23.2 -> 0.23.4. 2017-01-08 20:14:34 +01:00
FaustXVI 5c55d54db9
discord: 0.0.11 -> 0.0.13 2017-01-08 18:30:11 +01:00
Sebastian Hagen d042abef26 zlib: Fix zlib.net URL. (#21753) 
Look for primary source file below
  http://zlib.net/fossils/ as opposed to
  http://zlib.net/
. zlib-1.2.8.tar.gz is still available at the former location, and will likely
remain there. In addition, it's important that the first URL work since zlib
is in the bootstrap path, and 16.09 (at least) bootstrap doesn't try to fetch
from later ones.
 2017-01-08 18:09:57 +01:00
Jörg Thalheim c63ebbaab4 Merge pull request #21752 from sh01/ed_mirror 
ed: Add fedoraproject mirror.
 2017-01-08 17:29:22 +01:00
Moritz Ulrich 7435fefd26
rustc: Disable fragile tcp tests on Darwin 
This is an alternative implementation of
https://github.com/NixOS/nixpkgs/pull/21741/files
 2017-01-08 16:55:36 +01:00
Moritz Ulrich 2a2e8e906b
rustRegistry: 2016-12-28 -> 2017-01-08 2017-01-08 16:55:36 +01:00
Tristan Helmich a66480d52b sonarr: 2.0.0.4427 -> 2.0.0.4472 2017-01-08 16:29:33 +01:00
Graham Christensen 07e425b9b9 Merge pull request #21749 from sifmelcara/update/crystal 
crystal: 0.20.3 -> 0.20.4
 2017-01-08 08:49:59 -05:00
Sebastian Hagen 547b203b9a ed: Add fedoraproject mirror. 
The existing URL has gone dark; this commit adds one from fedoraproject.org
that still works. We put the new mirror first since ed is in the bootstrap
path, and 16.09 bootstrap doesn't try later URLs.
 2017-01-08 13:46:16 +00:00
Domen Kožar 8940c68c09
hydra: 2016-04-15 -> 2016-12-09 
Fixes #19396 #21424
 2017-01-08 14:40:12 +01:00
Michael Raskin 9653be493a firejail: 0.9.44.2 -> 0.9.44.4 2017-01-08 13:58:24 +01:00
Josef Kemetmueller 64e4b7ac42 grib-api: 1.14.4 -> 1.19.0 
- Remove downloading of testdata during buildPhase to
  - fix hydra build
  - remove impurity
  - reduce traffic
- Bump version
- Add myself as a maintainer
 2017-01-08 12:42:25 +01:00
Jay Mundrawala 3dc8b5d904 rustUnstableBin.rustc: Run patchelf on bin/rustdoc (#21746) 
Cargo seems to run rustdoc and produces an annoying error when
it tries to run.
 2017-01-08 10:53:44 +01:00
mingchuan e8c9a4b3ba crystal: 0.20.3 -> 0.20.4 2017-01-08 14:31:59 +08:00
Daiderd Jordan 826d6aa6cd Merge pull request #21382 from johbo/darwin-pygtk-quartz-backend 
Darwin gtk2/pygtk quartz backend
 2017-01-08 00:18:33 +01:00
tkatchev 9c2a222092 gtest, gmock: fix broken package by updating to 1.8.0. 2017-01-08 00:00:55 +03:00
Frederik Rietdijk 9fdbb624e3 Merge pull request #21740 from srhb/init/mir-qualia 
qualia: init at 1.0.0
 2017-01-07 21:33:29 +01:00
Sarah Brofeldt 760710efd1 qualia: init at 1.0.0 
tests disabled
maintainer srhb
 2017-01-07 21:24:44 +01:00
Domen Kožar 372e04f189
libpqxx: use gnused_422 2017-01-07 20:16:17 +01:00
Jascha Geerds a5be4fe67a pythonPackages.docker_compose: Set meta.platforms to linux 2017-01-07 19:52:35 +01:00
Jascha Geerds fdb5832d09 pythonPackages.docker_compose: Add myself as a maintainer 2017-01-07 19:48:38 +01:00
Johannes Bornhold f025d2c189 gtksourceview: Add gtk-mac-integration for darwin 
Had to pick two commits as patches from the repository which update the
dependency ige-mac-integration to gtk-mac-integration.
 2017-01-07 19:21:43 +01:00
Matthew Bauer ea053cad7a gtk-mac-integration: init at 2.0.8 2017-01-07 19:21:42 +01:00
Johannes Bornhold 0f67005c4a cairo: Add ApplicationServices as propagatedBuildInput 
Noticed that it caused depending packages to fail, like librsvg, imagemagiv, graphviz.
 2017-01-07 19:21:42 +01:00
schneefux 96504cd75c pythonPackages.discordpy: 0.15.1 -> 0.16 2017-01-07 20:02:05 +02:00
Anmol Sethi 2ef6af7afd libtermkey: from 0.18 to 0.19 2017-01-07 19:59:45 +02:00
Johannes Bornhold 8f7adffe4d pygtk: Add flag -ObjC for darwin 
Had to add this so that it was able to parse the headers from the frameworks.
 2017-01-07 17:35:09 +01:00
Johannes Bornhold 5a572f8018 gtk2: Use quartz backend on darwin 2017-01-07 17:35:09 +01:00
Johannes Bornhold 9f31633a50 librsvg: Add framework ApplicationServices for darwin 2017-01-07 17:31:10 +01:00
Johannes Bornhold 354c91df2e pango: Add darwin frameworks for fond rendering 2017-01-07 17:31:10 +01:00
Johannes Bornhold bbdca635cf cairo: Add CoreText for darwin 
This helps so that fonts are properly rendered in gtk when used with the backend
"quartz".
 2017-01-07 17:31:10 +01:00
Frederik Rietdijk 969651aaca pythonPackages.pyjwt: use cryptography instead of pycrypto 2017-01-07 17:28:55 +01:00
Nikolay Amiantov 6a55b52944 warzone2100: 2.1.5 -> 2.2.2 2017-01-07 18:48:15 +03:00
Jörg Thalheim 7e3ed8b44f Merge pull request #21735 from peterhoeg/u/qrcode 
qrcode: 2014-01-01 -> 2016-08-04
 2017-01-07 16:38:42 +01:00
Shea Levy 71fc7f9748 ghc-head: Fixes for new base and Cabal 2017-01-07 10:28:48 -05:00
Domen Kožar 133ba5f08a
GHC: 8.0.2-rc2 -> 8.0.2 2017-01-07 16:17:54 +01:00
Peter Hoeg 24aae1effe qrcode: 2014-01-01 -> 2016-08-04 2017-01-07 22:58:45 +08:00
Gabriel Ebner da9e9061f1 haskellPackages.hledger-diff: 0.2.0.6 -> 0.2.0.7 
Currently hledger-diff is broken because of the hledger-lib version
bump.
 2017-01-07 15:16:36 +01:00
Peter Hoeg 427de85390 loki: init at 0.1.7 2017-01-07 20:49:54 +08:00
Domen Kožar b86c663a04 Merge pull request #21654 from awakenetworks/connor/print_metadata 
nix-prefetch-git: remove call to nonexistent print_metadata function
 2017-01-07 13:00:41 +01:00
Graham Christensen 428927ffa6
openjpeg2: patch for multiple CVEs 
-  Floating Point Exception (aka FPE or divide by zero) in
    opj_pi_next_cprl function in openjp2/pi.c:523 in OpenJPEG
    2.1.2. (CVE-2016-9112)

 -  There is a NULL Pointer Access in function imagetopnm of
    convert.c:1943(jp2) of OpenJPEG 2.1.2. image->comps[compno].data is
    not assigned a value after initialization(NULL). Impact is Denial of
    Service. (CVE-2016-9114)

 -  NULL Pointer Access in function imagetopnm of convert.c:2226(jp2) in
    OpenJPEG 2.1.2. Impact is Denial of Service. Someone must open a
    crafted j2k file. (CVE-2016-9116)

 -  Heap Buffer Overflow (WRITE of size 4) in function pnmtoimage of
    convert.c:1719 in OpenJPEG 2.1.2. (CVE-2016-9118)
 2017-01-07 06:51:31 -05:00
Peter Simons c5f8c7fe36 Merge pull request #21722 from mimadrid/fix/r-modules 
Fix a lot of rPackages
 2017-01-07 12:19:42 +01:00
Franz Pletz db8b044651 Merge pull request #21685 from mayflower/fix/bind-outputs 
bind: fix collision of binaries in outputs
 2017-01-07 11:37:17 +01:00
Frederik Rietdijk c0c97c5793 Merge pull request #21729 from Ralith/matrix-synapse 
matrix-synapse: 0.18.6-rc3 -> 0.18.7-rc2
 2017-01-07 09:02:30 +01:00
Dmitry Kalinkin 44a78fb0da
rivet: fix runtime on darwin 2017-01-07 03:00:04 -05:00
Joachim F f1dc2dd552 Merge pull request #21694 from dtzWill/fix/skype-pax 
skype: paxmark to fix execution on PaX-enabled kernels
 2017-01-07 08:05:02 +01:00
Joachim Fasting 0f24e56728
dnscrypt-proxy: 1.9.0 -> 1.9.1 2017-01-07 08:02:53 +01:00
Joachim Fasting d6ff445f10
grsecurity: 4.8.15-201612301949 -> 4.8.16-201701062021 2017-01-07 08:01:41 +01:00
Dmitry Kalinkin 0f71012fe6
sherpa: add useful dependencies 2017-01-07 01:36:51 -05:00
Benjamin Saunders 7027bbfba3 matrix-synapse: 0.18.6-rc3 -> 0.18.7-rc2 2017-01-06 20:41:29 -08:00
Peter Hoeg 3674be1e98 peruse: 1.1 -> 1.2 
1.2 also ships Peruse Creator
 2017-01-07 11:53:48 +08:00
Shea Levy 845dd121f8 ghc-head: Put ./boot into commonPreConfigure 2017-01-06 22:10:29 -05:00
Shea Levy c5c7911ac2 libuv: disable getaddrinfo tests. 
Seem to require network access, at least on darwin
 2017-01-06 21:09:49 -05:00
Franz Pletz e6708cea37
bind: fix collision of binaries in outputs 
Using outputsToInstall the intended behaviour of including host and dnsutils
when bind is installed can be implemented instead of using symlinks to fix
installing all outputs individually with nix-env.

Fixes #19761.
 2017-01-07 02:44:54 +01:00
Daiderd Jordan 56cceca999 Merge pull request #21700 from polyrod/master 
sakura: fixed GLib-GIO-ERROR #21698
 2017-01-07 01:40:00 +01:00
Franz Pletz 887e703d42 Merge pull request #21640 from mguentner/cpp_ipfs_api_update 
cpp-ipfs-api: 2016-11-09 -> 2017-01-04
 2017-01-07 00:44:01 +01:00
Thomas Tuegel 7215118c1b Merge pull request #21704 from gnidorah/master 
kde-gtk-config: follow symlinks for cursors
 2017-01-06 16:51:27 -06:00
Tim Steinbach c1d20ea50c
kernel: 4.9.0 -> 4.9.1 2017-01-06 16:15:18 -05:00
Tim Steinbach ecf87b11f2
kernel: 4.8.15 -> 4.8.16 2017-01-06 16:15:02 -05:00
Tim Steinbach 8fda707027
kernel: 4.4.39 -> 4.4.40 2017-01-06 16:14:30 -05:00
Thomas Tuegel 8633dab72a Merge pull request #21650 from dbalan/ldns-1.7.0 
ldns 1.6.17 -> 1.7.0
 2017-01-06 14:46:18 -06:00
Ioannis Koutras f935115ce0 qtpass: 1.1.4 -> 1.1.6 2017-01-06 22:32:24 +02:00
Vladimír Čunát 1e253d54f5
libpng12: security 1.2.56 -> 1.2.57 
CVE-2016-10087
 2017-01-06 21:15:46 +01:00
mimadrid 8954412fcc
r-modules: fix snpStats package 2017-01-06 21:07:25 +01:00
mimadrid b5a0925663
r-modules: fix VariantAnnotation package 2017-01-06 21:07:25 +01:00
mimadrid 6540b6507d
r-modules: fix rtracklayer package 2017-01-06 21:07:25 +01:00
mimadrid baf65d5000
r-modules: fix Rsubread package 2017-01-06 21:07:25 +01:00
mimadrid 9ebab25442
r-modules: fix gmapR package 2017-01-06 21:07:25 +01:00
mimadrid 286e86f3a5
r-modules: fix oligo package 2017-01-06 21:07:25 +01:00
mimadrid afd1a4c933
r-modules: fix affyio package 2017-01-06 21:07:25 +01:00
mimadrid 4c0c3c7493
r-modules: fix BitSeq package 2017-01-06 21:07:24 +01:00
mimadrid 272b447ea7
r-modules: fix bamsignals package 2017-01-06 21:07:24 +01:00
mimadrid c5e4754ca7
r-modules: fix affyPLM package 2017-01-06 21:07:24 +01:00
mimadrid 1d7fd8f3c4
r-modules: fix xml2 package 2017-01-06 21:07:24 +01:00
mimadrid 5b813c2ab0
r-modules: fix XBRL package 2017-01-06 21:07:24 +01:00
mimadrid 512be9e14a
r-modules: fix WhopGenome package 2017-01-06 21:07:24 +01:00
mimadrid f9d84f8b65
r-modules: fix tkrplot package 2017-01-06 21:07:24 +01:00
mimadrid 0b3e62bb12
r-modules: fix tiff package 2017-01-06 21:07:23 +01:00
mimadrid 9420fa23c6
r-modules: fix TAQMNGR package 2017-01-06 21:07:23 +01:00
mimadrid 2303e63116
r-modules: fix spate package 2017-01-06 21:07:23 +01:00
mimadrid fcbed4b654
r-modules: fix showtext package 2017-01-06 21:07:23 +01:00
mimadrid 8a6b58d51d
r-modules: fix seqminer package 2017-01-06 21:07:23 +01:00
mimadrid e1a5eeef06
r-modules: fix seqinr package 2017-01-06 21:07:22 +01:00
mimadrid 1ef67b9e78
r-modules: fix RVowpalWabbit package 2017-01-06 21:05:54 +01:00
mimadrid ae2723a144
r-modules: fix rtiff package 2017-01-06 21:05:54 +01:00
mimadrid d7ac90dd0c
r-modules: fix rtfbs package 2017-01-06 21:05:53 +01:00
mimadrid fd175e4084
r-modules: fix Rssa package 2017-01-06 21:05:52 +01:00
mimadrid bd2aaada6e
r-modules: fix RSclient package 2017-01-06 21:05:52 +01:00
mimadrid 53235dbe14
r-modules: fix rphast package 2017-01-06 21:05:52 +01:00
mimadrid 780fb79e32
r-modules: fix Rmpfr package 2017-01-06 21:05:51 +01:00
mimadrid a58db75ccb
r-modules: fix rmatio package 2017-01-06 21:05:51 +01:00