20 commits

Author	SHA1	Message	Date
Justin Bedo	02a1a2b3c8	samtools: 1.11 -> 1.13	2021-10-12 10:19:36 +11:00
Ben Siraphob	badf51221d	treewide: stdenv.lib -> lib	2021-01-16 17:58:11 +07:00
Profpatsch	4a7f99d55d	treewide: with stdenv.lib; in meta -> with lib; ... Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix	2021-01-11 10:38:22 +01:00
Renato Alves	a28e5b0a4f	samtools: 1.10 -> 1.11	2020-10-29 18:27:22 +01:00
Michael Reilly	84cf00f980	treewide: Per RFC45, remove all unquoted URLs	2020-04-10 17:54:53 +01:00
Jonathan Ringer	4de137a77d	samtools: 1.9 -> 1.10	2020-01-19 13:13:01 -08:00
Miguel Madrid Mencía	148c82e07e	maintainer: mimadrid: update github username and personal data	2019-09-14 12:15:46 +02:00
volth	46420bbaa3	treewide: name -> pname (easy cases) (#66585) ... treewide replacement of stdenv.mkDerivation rec { name = "*-${version}"; version = "*"; to pname	2019-08-15 13:41:18 +01:00
Orivej Desh	cefd38b721	samtools: 1.8 -> 1.9	2018-09-21 22:42:28 +00:00
R. RyanTM	c478b6217f	samtools: 1.7 -> 1.8 ... Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/samtools/versions. These checks were done: - built on NixOS - ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/samtools --help’ got 0 exit code - ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/samtools help’ got 0 exit code - ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/blast2sam.pl -h’ got 0 exit code - ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/blast2sam.pl --help’ got 0 exit code - ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/blast2sam.pl help’ got 0 exit code - ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/novo2sam.pl help’ got 0 exit code - ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/psl2sam.pl -h’ got 0 exit code - ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/psl2sam.pl --help’ got 0 exit code - ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/psl2sam.pl help’ got 0 exit code - ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/soap2sam.pl -h’ got 0 exit code - ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/soap2sam.pl --help’ got 0 exit code - ran ‘/nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8/bin/soap2sam.pl help’ got 0 exit code - found 1.8 with grep in /nix/store/ip1zr4rg4pwq8f3fs8ar570l0zdicai7-samtools-1.8 - directory tree listing: https://gist.github.com/4673ea3645eb509035dcb386c4ad1da2	2018-04-10 13:04:09 -07:00
Jörg Thalheim	08d1400816	Merge pull request #34530 from unode/samtools-old ... samtools-old: init at 0.1.19	2018-02-10 08:34:26 +00:00
Renato Alves	154d1d2f19	samtools: 1.6 -> 1.7	2018-02-06 15:38:00 +01:00
Renato Alves	65ea5f8857	samtools_0_1_19: init at 0.1.19 ... samtools-1.5 already exists but some software requires the older version	2018-02-02 21:49:50 +01:00
Orivej Desh	09a5396982	samtools: fix up	2017-10-01 07:36:30 +00:00
mimadrid	ee2c76693e	samtools: 1.5.0 -> 1.6.0	2017-09-30 22:20:02 +02:00
mimadrid	ca45a26ec3	samtools: 1.4.0 -> 1.5.0	2017-08-13 00:17:25 +02:00
mimadrid	9073e67568	samtools: 1.3.1 -> 1.4	2017-05-07 23:15:48 +02:00
mimadrid	14feec44e4	samtools: refactoring	2016-06-24 21:08:17 +02:00
Tobias Geerinckx-Rice	dce1edf946	samtools: 1.3 -> 1.3.1	2016-05-25 02:06:47 +02:00
Louis Taylor	70c1b2b1c0	samtools: init at 1.3	2016-04-12 20:13:40 +01:00