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273 commits

Author SHA1 Message Date
Nikolay Amiantov 41abde91ce nccl: 1.2.4-1 -> 2.1.4 
It's closed source now.
 2018-02-25 22:24:09 +03:00
Nikolay Amiantov e77d2106bf ipopt: 3.12.8 -> 3.12.9 2018-02-25 22:24:09 +03:00
Nikolay Amiantov efe836160f cudatoolkit: 9.0.176 -> 9.1.85.1 2018-02-25 22:24:09 +03:00
Yuri Aisaka f8c48908f7 caffe2: init at 0.8.1 (#34956) 2018-02-16 15:09:40 +00:00
Will Dietz 8dfe068f86 openblas: patch to fix on non-glibc 2018-02-13 09:44:48 -06:00
Will Dietz c8081971f4 openblas: NO_AFFINITY=1 fix for musl 2018-02-13 09:44:48 -06:00
Renato Alves b2284e0454
htslib: 1.6 -> 1.7 2018-02-06 15:37:50 +01:00
Markus Kowalewski a16880533f arpack: remove FFLAGS 2018-01-22 15:52:57 -08:00
Markus Kowalewski eb30d65de6 arpack: 3.3.0 -> 3.5.0 2018-01-22 15:36:43 -08:00
Tuomas Tynkkynen 722295fc15 openblas: Support ARMv6 2017-12-30 00:19:57 +02:00
hyphon81 05573d3e06
nccl: init at 1.3.4-1 2017-12-28 17:46:52 +01:00
Orivej Desh 4de81540df
Merge pull request #32427 from TravisWhitaker/cudnn 
cuDNN 7.0.3 -> 7.0.5
 2017-12-17 04:25:42 +00:00
georgewhewell 73b65551f4 openblas: add aarch64 platform config 2017-12-11 19:22:07 +02:00
Travis Whitaker 777c9bfdae cuDNN 7.0.3 -> 7.0.5 2017-12-07 15:13:07 -08:00
Orivej Desh 45cf0b0da4 fenics: restrict to Darwin 
It has never been building on Linux.
 2017-12-01 07:17:15 +00:00
Orivej Desh 4d50d79bc8 atlas: disable parallel building 2017-11-22 06:49:21 +00:00
Orivej Desh d5e3935a6a atlas: enable parallel building 2017-11-21 19:29:10 +00:00
Nikolay Amiantov 77046bed8a cudnn7: 7.0 -> 7.0.3 2017-10-28 17:39:59 +03:00
Nikolay Amiantov 50a223b144 clblas: 20160505 -> 2.12 2017-10-19 12:47:30 +03:00
Nikolay Amiantov 6309e5fa01 cudnn: refactor to use shared derivation 
Also return 8.0-6.0 version for TensorFlow.
 2017-10-19 12:47:30 +03:00
Nikolay Amiantov ce9059a120 cudnn_cudatoolkit9: init at 7.0 
Make it the default.
 2017-10-19 12:47:30 +03:00
Orivej Desh 047c576353 Merge pull request #29963 from mimadrid/update/samtools-1.6.0 
samtools: 1.5.0 -> 1.6.0
 2017-10-02 01:07:11 +00:00
Orivej Desh 0acf94bb9f htslib: fix up 2017-10-01 07:12:52 +00:00
mimadrid 25b17ae1d7
htslib: 1.5.0 -> 1.6.0 2017-09-30 22:14:49 +02:00
Nikolay Amiantov 098c6825e0 blas: 3.5.0 -> 3.7.1 2017-09-25 22:46:44 +03:00
Jörg Thalheim aab8f8df4b nifticlib: use mirror for sourceforge 2017-09-21 09:10:12 +01:00
Ben Darwin 0d981c5761 nifticlib: init at 2.0.0 2017-09-20 19:04:22 -04:00
John Ericson 8fccaa284d Merge pull request #29282 from obsidiansystems/soext 
lib, treewide: Add `*Platform.extensions` and use it where possible
 2017-09-13 11:20:06 -04:00
John Ericson 5aec3f96a2 treewide: Use *Platform.extensions 2017-09-13 11:16:10 -04:00
Jean-Philippe Bernardy 1ba197f225 make my maintainer handle match my github username 2017-09-12 15:17:18 +02:00
Jean-Philippe Bernardy d51bd36646 cudnn: add 6.0 2017-09-07 09:28:03 +02:00
jamtrott c8c0cd4d6c petsc: init at 3.7.6 (#28368) 
* petsc: init at 3.7.6

* petsc: use configureFlagsArray

* petsc: Remove unneeded binaries
 2017-09-03 17:11:16 +01:00
James D. Trotter 518fb60797 fenics: init at 2017.1.0 2017-08-15 16:19:45 +02:00
Frederik Rietdijk b14efb6a6c Merge pull request #28211 from mimadrid/update/samtools-1.5.0 
samtools: 1.4.0 -> 1.5.0
 2017-08-13 22:32:48 +02:00
mimadrid 302e7825fa
htslib: 1.4.0 -> 1.5.0 2017-08-13 00:16:42 +02:00
mimadrid 09e0cc7cc7
Update homepage attributes: http -> https 
Homepage link "http://.../" is a permanent redirect to "https://.../" and should be updated
https://repology.org/repository/nix_stable/problems
 2017-08-03 11:56:15 +02:00
Silvan Mosberger f5fa5fa4d6 pkgs: refactor needless quoting of homepage meta attribute (#27809) 
* pkgs: refactor needless quoting of homepage meta attribute

A lot of packages are needlessly quoting the homepage meta attribute
(about 1400, 22%), this commit refactors all of those instances.

* pkgs: Fixing some links that were wrongfully unquoted in the previous
commit

* Fixed some instances
 2017-08-01 22:03:30 +02:00
Frederik Rietdijk ec59e3b3f5 openblas: 0.2.19 -> 0.2.20 2017-07-28 18:08:06 +02:00
Nikolay Amiantov 5fdc1e763f ipopt: 3.12.6 -> 2.12.8 2017-07-27 17:07:44 +03:00
Ben Darwin d1d0824b2f elastix: change platforms to "linux" from "unix" 2017-07-19 17:41:14 -04:00
Ben Darwin b21805d972 elastix: init at 4.8 2017-05-23 18:25:15 -04:00
Tyson Whitehead 8fdbc828b9
clblas-cuda: requires ocl-icd now for libOpenCL.so.1 #25902 2017-05-18 18:32:09 -04:00
Jörg Thalheim be19ad150c Merge pull request #25594 from mimadrid/update/htslib-1.4 
Update/htslib 1.4
 2017-05-11 07:08:56 +01:00
mimadrid 295a23a2db
htslib: 1.3.2 -> 1.4 2017-05-07 23:15:42 +02:00
Daiderd Jordan f240276000
blas: fix darwin library id 2017-04-27 23:25:07 +02:00
Vladimír Čunát 6617c8bd87
A fixed version of commit eb750f9a7b 
For detailed explanation see:
https://github.com/NixOS/nixpkgs/commit/24444513fb5#commitcomment-21767916
 2017-04-14 18:59:36 +02:00
Joachim Fasting 540a6412e3
suitesparse_4_4: NIX_CFLAGS -> NIX_CFLAGS_COMPILE 
Tested with nix-build -A suitesparse_4_4
 2017-04-12 19:27:03 +02:00
Joachim Fasting a883581ddb
suitesparse_4_2: remove bogus NIX_CFLAGS 
NIX_CFLAGS should be NIX_CFLAGS_COMPILE; since pic is the default, we
simply remove the bogus declaration.

Tested with nix-build -A suitesparse_4_2
 2017-04-12 19:26:58 +02:00
Frederik Rietdijk 767e459200 Merge pull request #22726 from matthewbauer/openblas-closure-size 
openblas: disable static libs
 2017-04-10 16:11:19 +02:00
Matthew Daiter d712c04d25 suitesparse: refining CUDA support 2017-04-04 17:23:20 +02:00
Matthew Daiter 6f721ce534 suitesparse: add CUDA support 2017-03-29 15:47:51 +02:00
Matthew Bauer bd8654f45d openblas: disable static libs 
Disable static on openblas. This should save about 57M from closure sizes.
 2017-02-12 18:45:44 -06:00
Matthew Daiter 82835f7eb3 cudnn51_cudatoolkit80: hash change 2017-02-08 18:40:32 +01:00
Anthony Cowley 084a76ef6f atlas: change platforms to unix 
The build succeeds on darwin and linux.
 2017-01-10 21:02:04 -05:00
Robert Helgesson 2990cd8aea
clblas-cuda: use system gtest library 
Without this the build attempts to download the library.
 2016-12-28 12:21:07 +01:00
mimadrid 25c984f940
htslib: 1.3.1 -> 1.3.2 2016-12-23 19:31:44 -05:00
Thomas Tuegel bed668c051
openblas: refactor and set TARGET always 2016-12-10 16:49:45 -06:00
Nikolay Amiantov be95ceaff2 treewide: quote URLs in my packages 2016-11-24 01:17:52 +03:00
Matthew Daiter 3897b344f3 cudnn51_cudatoolkit80: Init at 5.1-8.0 2016-11-21 14:51:39 +01:00
Falco Peijnenburg 5f5f0614b0 Support for ARM in openblas 
Attempting to build openblas on ARM resulted in the error "unsopported system: armv7l_linux". This PR resolves that issue and some other issues that pop up when trying to build openblas for ARM.
 2016-11-18 12:44:49 +01:00
Matthew Daiter 541b3fc7d2 cudnn5_cudatoolkit80: adding to main repo 2016-11-07 12:07:29 +01:00
Daiderd Jordan 3187b01720 Merge pull request #19816 from veprbl/octave_fixes 
octave: darwin fix
 2016-11-05 10:49:33 +01:00
Frederik Rietdijk 7077a270bf Merge remote-tracking branch 'upstream/master' into HEAD 2016-10-26 13:06:43 +02:00
Dmitry Kalinkin a8eb57d953
openblas: silence warnings on darwin 
Without this one gets a lot of build time warnings like:

ld: warning: object file (/tmp/strip.2OzFn8) was built for newer OSX
version (10.9) than being linked (10.7)
 2016-10-23 21:19:14 -04:00
Thomas Tuegel a58ec829e4
openblas: disable some hardening flags 2016-10-22 12:57:40 -05:00
Frederik Rietdijk 9b66b5c2cc liblapack: use python2 2016-10-18 23:16:05 +02:00
Thomas Tuegel d94abcb157
openblas: 0.2.17 -> 0.2.19 2016-09-09 19:42:54 -05:00
Michael Raskin 6b075ee8b1 openlibm: 0.4.1 -> 0.5.4 2016-09-06 19:31:38 +02:00
obadz 0e8d2725dc Merge branch 'master' into staging 2016-08-23 18:50:06 +01:00
Tuomas Tynkkynen a18ee4acb7 treewide: Make explicit that 'dev' output of boost is used 
Also fix one incorrect output in geant.
 2016-08-23 04:32:21 +03:00
Tuomas Tynkkynen d3705faa56 treewide: Use makeLibraryPath in LD_LIBRARY_PATHs 2016-08-23 00:14:00 +03:00
Robin Gloster 33e1c78ae3 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-08-16 07:54:01 +00:00
Nikolay Amiantov 0464600859 ipopt: 3.12.4 -> 3.12.6 2016-08-14 22:37:08 +03:00
Robin Gloster 1b979d8384 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-08-03 13:34:44 +00:00
Tuomas Tynkkynen 21f17d69f6 treewide: Add lots of meta.platforms 
Build-tested on x86_64 Linux & Mac.
 2016-08-02 21:42:43 +03:00
Robin Gloster 1f04b4a566 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-07-21 00:56:43 +00:00
Josef Kemetmueller f3dc4d9ec3 superlu: init at 5.2.1 2016-07-19 12:37:08 +00:00
Franz Pletz f597e97236 atlas: Fix hardening 2016-07-13 19:30:52 +02:00
Franz Pletz 26dd9acba5 Merge remote-tracking branch 'origin/master' into hardened-stdenv 2016-07-09 13:21:28 +02:00
Joachim Fasting 46b07b335b Merge pull request #16379 from mimadrid/init/bcftools-1.3.1 
bcftools: init at 1.3.1
 2016-06-24 22:15:51 +02:00
mimadrid d3da5cbf44
htslib: init at 1.3.1 2016-06-24 21:08:16 +02:00
artuuge 465d6a2113 Theano-cuda: init at 0.8.2 2016-06-20 01:06:07 +02:00
Robin Gloster 8031cba2ab Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-06-10 09:27:04 +00:00
artuuge 5b51f0bff9 clblas-cuda: init at git-20160505 2016-06-05 14:33:19 +02:00
Ian-Woo Kim ff8985e7ab cudnn: add cudatoolkit to propagatedBuildInputs 2016-06-02 19:33:03 +02:00
Robin Gloster 2d382f3d98 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-05-30 19:39:34 +00:00
Arseniy Seroka c6b3aca4e2 Merge pull request #15654 from wavewave/magma 
magma: init at 2.0.2
 2016-05-26 01:02:14 +03:00
Ian-Woo Kim e47070ad64 cudnn: init at 4.0 2016-05-25 18:26:57 +00:00
Ian-Woo Kim fd42fccd4c magma: init at 2.0.2 2016-05-25 18:14:41 +00:00
Franz Pletz f8d481754c
Merge remote-tracking branch 'origin/master' into hardened-stdenv 2016-05-18 17:10:02 +02:00
Peter Simons 8e462995ba Bring my stdenv.lib.maintainers user name in line with my github nick. 2016-05-16 22:49:55 +02:00
Evgeny Egorochkin 4b979eef29 atlas: put the name suffix where it belongs 2016-05-16 10:19:38 +03:00
Robin Gloster d020caa5b2 Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-04-18 13:49:22 +00:00
= 9ec9da1a24 iSpike: init at 2.1.1 2016-04-12 14:36:20 +02:00
Robin Gloster 696d85a62d Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-04-03 11:01:57 +00:00
Frederik Rietdijk 4bd01c5cbd openblas_2_14: remove 
because we don't need it for numpy anymore.
 2016-03-31 21:51:45 +02:00
Franz Pletz 2e08d8234e Merge remote-tracking branch 'origin/master' 2016-03-31 10:06:30 +02:00
Frederik Rietdijk c1abb1d404 openblas: 0.2.15 -> 0.2.17 2016-03-28 15:58:10 +02:00
Robin Gloster 3f45f0948d Merge remote-tracking branch 'upstream/master' into hardened-stdenv 2016-03-15 01:44:24 +00:00
Anthony Cowley f3a6f3e2f3 suitesparse: build dylibs on darwin 
Makes the shared libraries usable on darwin so that, e.g., the Julia
compiler may be built.
 2016-03-13 04:13:26 -04:00