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5566 commits

Author SHA1 Message Date
R. Ryantm af3af2df32 cwltool: 3.1.20220124184855 -> 3.1.20220202173120 2022-02-03 20:06:12 -05:00
Timo Kaufmann 0371c7ba56
Merge pull request #157981 from collares/sage-fonttools-revert 
sage: no longer assume fonttools emits deprecation warnings
 2022-02-03 18:03:39 +01:00
Artturi 0f491bd7a3
Merge pull request #157264 from FliegendeWurst/disable-broken-parallel 2022-02-03 16:04:57 +02:00
Mauricio Collares 0ebdfab88b lean: 3.38.0 -> 3.39.0 2022-02-03 09:21:20 -03:00
Mauricio Collares 778b1f8b4f sage: no longer assume fonttools emits deprecation warnings 2022-02-03 08:28:22 -03:00
Bobby Rong 46a4949078
Merge pull request #157927 from r-ryantm/auto-update/vowpal-wabbit 
vowpal-wabbit: 8.11.0 -> 9.0.1
 2022-02-03 17:28:02 +08:00
R. Ryantm 6d957f73ab vowpal-wabbit: 8.11.0 -> 9.0.1 2022-02-03 02:08:33 +00:00
Сухарик 3f90b3a1e1 anders: init at 1.1.1 2022-02-02 12:31:53 +03:00
markuskowa 65bc2de0ef
Merge pull request #152447 from Cogitri/bada-bib 
bada-bib: init at 0.3.0
 2022-02-01 22:26:26 +01:00
Martin Weinelt 778d148959
Merge pull request #155061 from piegamesde/gnome 2022-02-01 20:53:10 +01:00
Bruno Bzeznik 77682cf879
shtns: init at 3.5.1 (#151061) 2022-01-31 21:28:05 +01:00
R. Ryantm d44e044d84 kallisto: 0.46.2 -> 0.48.0 2022-01-31 09:53:54 -08:00
Bruno Bzeznik b6fa4975cf
repseek: init at 9Sep2014 (#148017) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-01-31 14:59:32 +01:00
7c6f434c 9b76122d71
Merge pull request #140889 from collares/sage-9.5 
sage: 9.4 -> 9.5
 2022-01-31 13:24:26 +00:00
Robert Schütz a13fe11c59 sasview: 4.2.0 -> 5.0.4 2022-01-30 20:47:10 +00:00
Mauricio Collares 8ec9a32829 sageWithDoc: do not autodetect optional features when testing dochtml 2022-01-30 13:15:22 -03:00
Mauricio Collares cecbb55fb0 sage: 9.4 -> 9.5 2022-01-30 13:15:20 -03:00
Sandro a724f8dc29
Merge pull request #155897 from FliegendeWurst/key-2.10 2022-01-30 01:21:43 +01:00
piegames 9a2a3d0395 gfm: drop 
It does not appear to have an attribute that references it anymore?
(Not sure though, that name's hard to grep for)
 2022-01-29 18:09:16 +01:00
piegames 5ffbf9ed81 tilp2: drop 
While tilp2's libglade dependency is optional, it still has a hard dependency
on it via gfm
 2022-01-29 18:08:52 +01:00
markuskowa 01f1b41a7d
Merge pull request #156381 from r-ryantm/auto-update/bowtie2 
bowtie2: 2.4.4 -> 2.4.5
 2022-01-29 14:56:23 +01:00
FliegendeWurst a43431f376 alliance: disable parallel build 2022-01-29 11:40:09 +01:00
FliegendeWurst 48a133a066 key: add a desktop item 2022-01-29 10:14:54 +01:00
Vegard Strand Lende 41f927b433
verilator: 4.210 -> 4.218 (#157122) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-01-29 02:30:41 +01:00
Yipeng Sun 54cbee8d97
root: tweak wrapping flags for auxiliary programs, avoid forcing CMAKE_CXX_STANDARD (#157069) 2022-01-27 19:37:36 -05:00
Sandro 27cccd4e49
Merge pull request #151363 from Stunkymonkey/doc-updateWalker 2022-01-27 14:06:36 +01:00
ajs124 3638ca8be6
Merge pull request #156001 from helsinki-systems/upd/tulip 
tulip: 5.2.1 -> 5.6.1
 2022-01-26 23:33:44 +01:00
Felix Buehler 09e3b7a570 treewide: remove all updateWalker/downloadURLRegexp 2022-01-26 21:46:08 +01:00
Felix Buehler ed7bf9452c treewide: remove *.upstream files from updateWalker 2022-01-26 21:46:07 +01:00
Gabriel Ebner b27b115b41
Merge pull request #154272 from jvanbruegge/isabelle-build-hol 
isabelle: Prebuild HOL session
 2022-01-26 16:37:18 +01:00
Dmitry Kalinkin f66b63a7cb
Merge pull request #156217 from smancill/shogun-fixes 
Shogun: use Python 3 and fix CMake targets
 2022-01-26 04:25:27 -05:00
R. Ryantm 6b3bf39220 cwltool: 3.1.20220119140128 -> 3.1.20220124184855 2022-01-25 21:56:09 -05:00
Vincent Laporte 8187f6500d tamarin-prover: install emacs-mode 2022-01-25 15:54:15 +01:00
Vincent Laporte 20e7213d16 coq_8_15: 8.15+rc1 → 8.15.0 2022-01-25 10:53:57 +01:00
Mauricio Collares 0aef6270cd sage: generate setup.cfg and requirements.txt for sagelib 2022-01-24 20:54:53 -03:00
Mauricio Collares 0a6b5115f6 singular: 4.2.0p2 -> 4.3.0 2022-01-24 20:54:53 -03:00
R. RyanTM 8bd7d6d6e0
star: 2.7.9a -> 2.7.10a 
(#155868)
 2022-01-24 19:51:44 +01:00
R. Ryantm ebb9e86bf9 bowtie2: 2.4.4 -> 2.4.5 2022-01-23 22:45:59 +00:00
Mario Rodas 111d7dc831
Merge pull request #156014 from r-ryantm/auto-update/deeptools 
deeptools: 3.5.0 -> 3.5.1
 2022-01-22 23:45:09 -05:00
Justin Bedő c24af4642c
sambamba: 0.8.1 -> 0.8.2 (#155972) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-01-23 04:51:46 +01:00
Alexandra 7267839e76
gprojector: init at 3.0.2 (#154932) 2022-01-23 04:04:10 +01:00
Sebastián Mancilla c03c5c1500 shogun: fix CMake targets 
CMake uses the directory of the configuration files to calculate
the path to the installed library and headers. But now that shogun uses
multiple outputs, this results in the $dev output being used for the
location of the shared library instead of $out.

Path the targets file to use the right location for the shared library.
 2022-01-22 18:41:49 -03:00
Sebastián Mancilla aaea9844c6 shogun: use Python 3 as build dependency 
Also default pythonSupport to false because it's broken for Python 3.

In any case the Python interface has been disabled for almost 2 years
now because the wrong CMake flag was being passed, so the build stays
the same.

But do use the proper flag now.
 2022-01-22 18:36:06 -03:00
FliegendeWurst 28b43ffd54 key: 2.6.3 -> 2.10.0 2022-01-22 15:55:25 +01:00
R. Ryantm f888e66ad4 cwltool: 3.1.20211107152837 -> 3.1.20220119140128 2022-01-21 09:09:34 -05:00
R. Ryantm 227011af59 deeptools: 3.5.0 -> 3.5.1 2022-01-21 05:36:24 +00:00
ajs124 479ca09609 tulip: 5.2.1 -> 5.6.1 2022-01-21 03:45:21 +01:00
markuskowa 1c0f3cd8df
Merge pull request #155893 from markuskowa/fix-molden-url 
molden: fix download URL
 2022-01-20 16:55:51 +01:00
Markus Kowalewski bb6bc8b315
molden: fix download URL 2022-01-20 15:47:46 +01:00
R. Ryantm 84930221fc sherpa: 2.2.11 -> 2.2.12 2022-01-20 08:36:02 -05:00