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3473 commits

Author SHA1 Message Date
Lancelot SIX b7c5508bfc
Merge pull request #86910 from lsix/cytoscape-3.8.0 
cytoscape: 3.7.2 -> 3.8.0
 2020-05-19 08:32:48 +01:00
Timo Kaufmann 91da9ed129
Merge pull request #87944 from timokau/palp-2.11 
palp: 2.1 -> 2.11
 2020-05-18 19:58:59 +00:00
Ryan Mulligan fdf4439acc
Merge pull request #87494 from r-ryantm/auto-update/SPAdes 
SPAdes: 3.14.0 -> 3.14.1
 2020-05-18 08:06:19 -07:00
Timo Kaufmann d65850e975 palp: 2.1 -> 2.11 
According to the homepage[1]:

> Small change in Mori.h for compatibility with gcc_10 (thanks to J.
  Puydt) [May 15, 2020].

Disabling the strictoverflow seems to be no longer necessary (I'm
relying on the check phase here).

[1] http://hep.itp.tuwien.ac.at/~kreuzer/CY/CYpalp.html
 2020-05-16 15:07:57 +02:00
Timo Kaufmann 51de320353 palp: add meta.changelog 2020-05-16 15:05:45 +02:00
Mario Rodas b022ecbf5d
lean: 3.10.0 -> 3.13.1 2020-05-16 04:20:00 -05:00
Matt Huszagh e8215cd634 colmap: update boost to 1.72 to fix build 2020-05-15 09:42:36 -07:00
R. RyanTM d11e5f1a4e verilator: 4.032 -> 4.034 2020-05-12 22:27:21 -07:00
R. RyanTM e07dfd38f1 wxmaxima: 20.02.4 -> 20.04.0 2020-05-12 22:12:53 -07:00
Jörg Thalheim 3a9543b778
Merge pull request #82634 from evils/kicad 2020-05-11 10:27:18 +01:00
R. RyanTM ae4d9cb9a0 stacks: 2.52 -> 2.53 2020-05-10 09:37:29 -07:00
R. RyanTM 92d970c766
snakemake: 5.15.0 -> 5.16.0 (#87496) 2020-05-10 10:09:53 -04:00
R. RyanTM 85b39960b5 SPAdes: 3.14.0 -> 3.14.1 2020-05-10 13:06:19 +00:00
Dmitry Kalinkin e80302dc7d
Merge pull request #86142 from bcdarwin/itk-5.1.0 
Itk: 5.0.1 -> 5.1.0
 2020-05-09 15:03:28 -04:00
Luz 5e40913eac librepcb: 0.1.3 -> 0.1.4 2020-05-09 09:10:20 +02:00
albakham 0c0f353d62 rofi-calc: 1.6 -> 1.7 2020-05-08 22:12:49 -04:00
Gabriel Ebner 115fa1c129 elan: 0.9.0 -> 0.10.0 2020-05-08 17:17:03 +02:00
Pavol Rusnak 6abf4a43ad
treewide: per RFC45, remove more unquoted URLs 2020-05-08 15:20:47 +02:00
Gabriel Ebner f6f5f6a30f elan: 0.8.0 -> 0.9.0 2020-05-07 15:35:13 +02:00
Mario Rodas 60762e9524
Merge pull request #86216 from bcdarwin/mrtrix-update 
mrtrix: 3.0_RC3_latest -> 3.0.0
 2020-05-07 06:57:44 -05:00
R. RyanTM bdcefc1053 marvin: 20.9.0 -> 20.10.0 2020-05-06 23:16:23 -07:00
Evils 2d3d8c4d66 kicad-unstable: 2020-04-25 -> 2020-05-06 2020-05-07 02:15:57 +02:00
Evils 1059fdf143 kicad: link utils; clean up wrapper installPhase 2020-05-07 01:54:51 +02:00
Evils 95e4e33bdf kicad-unstable-small: init to make kicad-unstable 
the -small packages depend on all hydra buildable dependencies
the non-small ones depend on packages3d which exceeds hydra's limit

set platforms to all (kicad is cross-platform)
clarify package differences in the description

set maintainers on just the top level derivation

switch -unstable to not save debug symbols

indicate patch in version string

note broken dependencies
 2020-05-07 01:54:50 +02:00
Evils 18a1b153ac kicad: expose base and libraries attributes 2020-05-07 01:54:50 +02:00
Yurii Rashkovskii c73875ea1e tlaplus: 1.5.6 -> 1.7.0 2020-05-06 12:26:10 -07:00
Jörg Thalheim 3c4096f18b
Merge pull request #86808 from doronbehar/rename-opencv 2020-05-05 20:19:50 +01:00
tim put 33b968049a
kstars: init at 2.9.8 (#86032) 
* kstars: init at 2.9.8

* Update pkgs/applications/science/astronomy/kstars/default.nix

Co-authored-by: Manuel Bärenz <programming@manuelbaerenz.de>

Co-authored-by: Manuel Bärenz <programming@manuelbaerenz.de>
 2020-05-05 20:38:28 +02:00
markuskowa 73dc3fc400
Merge pull request #86887 from r-ryantm/auto-update/gromacs 
gromacs: 2020.1 -> 2020.2
 2020-05-05 19:19:04 +02:00
Doron Behar 53effac040 mathematica: explicitly use opencv2 2020-05-05 13:48:55 +03:00
Lancelot SIX b9d13090a8
cytoscape: 3.7.2 -> 3.8.0 
See https://cytoscape.org/release_notes_3_8_0.html for release
information
 2020-05-05 09:52:27 +01:00
R. RyanTM ed5575071f gromacs: 2020.1 -> 2020.2 2020-05-05 05:59:23 +00:00
Ben Darwin 6f1430a802 ezminc: switch from itk5 to itk4 branch 
- itk5 branch currently lacks support for itk 5.1
 2020-05-05 00:08:04 -04:00
Mario Rodas 3b6c399fc3
Merge pull request #86720 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.22.2 -> 2.22.4
 2020-05-04 06:01:31 -05:00
R. RyanTM 0a115f8087 cryptominisat: 5.6.8 -> 5.7.0 2020-05-04 01:41:26 -07:00
R. RyanTM 877b1cdad7 picard-tools: 2.22.2 -> 2.22.4 2020-05-04 04:07:44 +00:00
Mario Rodas 3253c03d2e
lean: 3.9.0 -> 3.10.0 2020-05-02 04:20:00 -05:00
Benjamin Hipple 6b21541772
Merge pull request #86101 from dkudriavtsev/magic-vlsi 
magic-vlsi: init at 8.3.5
 2020-05-02 13:51:41 -04:00
R. RyanTM a930faab93 mxnet: 1.4.1 -> 1.6.0 2020-05-02 10:17:38 +02:00
R. RyanTM d0afae4298 dcm2niix: 1.0.20190902 -> 1.0.20200331 2020-05-02 10:16:22 +02:00
Wulfsta 5dbc4f7fda elmerfem: init at release-8.4 2020-05-01 18:35:57 -07:00
Timo Kaufmann 7866440f12
Merge pull request #86274 from samlich/sage-matrix-double-dense 
sage: fix doctest matrix_double_dense is_unitary
 2020-05-01 22:12:10 +00:00
Peter Simons 205e4dffd5
Merge pull request #86081 from jabranham/update-r 
R: 3.6.3 --> 4.0.0 & update packages
 2020-05-01 20:25:14 +02:00
samlich c0bd938e5c
sage: fix doctest matrix_double_dense is_unitary 2020-05-01 16:04:23 +00:00
R. RyanTM 7333b8cd6d eagle: 9.6.0 -> 9.6.1 2020-05-01 09:09:10 +02:00
Dmitry Kalinkin babf5477f5
Merge pull request #86251 from veprbl/pr/sherpa_2_2_9 
sherpa: 2.2.8 -> 2.2.9
 2020-04-29 19:10:43 -04:00
Jan Tojnar 2b5e2ffe0a
Merge pull request #86165 from jtojnar/libusb-compat-rename 2020-04-29 08:26:08 +02:00
Dmitry Kalinkin ae0685129b
sherpa: 2.2.8 -> 2.2.9 2020-04-28 16:46:02 -04:00
evils e257a92472
foldingathome: 7.5.1 -> 7.6.9 (#86171) 2020-04-28 17:20:43 +00:00
Ben Darwin 70171d321e mrtrix: 3.0_RC3_latest -> 3.0.0 2020-04-28 10:37:06 -04:00