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Author SHA1 Message Date
github-actions[bot] a7e07bddd5
Merge staging-next into staging 2021-05-02 12:24:53 +00:00
Luke Granger-Brown 884cf29501 dcm2niix: 1.0.20201102 -> 1.0.20210317 2021-05-02 11:10:40 +00:00
R. RyanTM ad5f251230 dcm2niix: 1.0.20200331 -> 1.0.20201102 2021-05-02 03:14:11 +00:00
github-actions[bot] e6037ce5fe
Merge staging-next into staging 2021-05-02 00:58:46 +00:00
Luke Granger-Brown ebf371726d sumorobot-manager: fix compilation 2021-05-02 00:12:19 +00:00
R. RyanTM 99f8bc3e03 sumorobot-manager: 0.9.0 -> 1.0.0 2021-05-02 00:02:46 +00:00
github-actions[bot] 49721bed32
Merge staging-next into staging 2021-05-01 18:26:21 +00:00
Dmitry Kalinkin c846fa1674
xfitter: fix for darwin 
Fixes: 8984fc29 ('xfitter: fix build w/glibc-2.32')
 2021-05-01 13:15:06 -04:00
Sandro 4b2c9640e7
Merge pull request #120613 from erikbackman/master 2021-05-01 18:42:40 +02:00
V 5a835e6e92 rink: 0.6.0 -> 0.6.1 2021-05-01 10:46:51 +02:00
R. RyanTM 96e1cc0768 lean: 3.29.0 -> 3.30.0 2021-05-01 05:49:45 +00:00
John Ericson 17305d2df0
Merge pull request #111487 from Ericson2314/llvm-outputs-and-cross-compile-tools 
llvmPackages: Clean up outputs
 2021-04-30 11:28:08 -04:00
github-actions[bot] d7882499f8
Merge staging-next into staging 2021-04-30 12:26:14 +00:00
Michael Raskin ee4684f052
Merge pull request #117716 from idontgetoutmuch/master 
Fix https://github.com/NixOS/nixpkgs/issues/117715
 2021-04-30 07:28:43 +00:00
Andrew Childs 7869d16545 llvmPackages: Multuple outputs for everythting 
Also begin to start work on cross compilation, though that will have to
be finished later.

The patches are based on the first version of
https://reviews.llvm.org/D99484. It's very annoying to do the
back-porting but the review has uncovered nothing super major so I'm
fine sticking with what I've got.

Beyond making the outputs work, I also strove to re-sync the packages,
as they have been drifting pointlessly apart for some time.

----

Other misc notes, highly incomplete

- lvm-config-native and llvm-config are put in `dev` because they are
  tools just for build time.

- Clang no longer has an lld dep. That was introduced in
  db29857eb3, but if clang needs help
  finding lld when it is used we should just pass it flags / put in the
  resource dir. Providing it at build time increases critical path
  length for no good reason.

----

A note on `nativeCC`:

`stdenv` takes tools from the previous stage, so:

1. `pkgsBuildBuild`: `(?1, x, x)`
2. `pkgsBuildBuild.stdenv.cc`: `(?0, ?1, x)`

while:

1. `pkgsBuildBuild`: `(?1, x, x)`
2. `pkgsBuildBuild.targetPackages`: `(x, x, ?2)`
3. `pkgsBuildBuild.targetPackages.stdenv.cc`: `(?1, x, x)`
 2021-04-30 05:41:00 +00:00
github-actions[bot] 3ad64733d9
Merge staging-next into staging 2021-04-29 18:28:08 +00:00
Dominic Steinitz 732ab3d4e2 Incorporate suggeston by collares 2021-04-29 17:34:34 +01:00
R. RyanTM 5b7a76e2a6 jmol: 14.31.35 -> 14.31.36 2021-04-29 12:39:03 +00:00
github-actions[bot] 01105a117a
Merge staging-next into staging 2021-04-29 06:21:55 +00:00
R. RyanTM 5122077801 gmsh: 4.8.1 -> 4.8.3 2021-04-29 00:17:51 -04:00
R. RyanTM e99e9f2d47 elan: 1.0.0 -> 1.0.2 2021-04-29 00:04:34 -04:00
github-actions[bot] 655989d7b3
Merge staging-next into staging 2021-04-28 00:15:29 +00:00
Gabriel Ebner a062505e10
Merge pull request #120177 from r-ryantm/auto-update/elan 
elan: 0.11.0 -> 1.0.0
 2021-04-27 22:52:12 +02:00
R. RyanTM 32cb3382e5 elan: 0.11.0 -> 1.0.0 2021-04-27 22:32:13 +02:00
Gabriel Ebner abbc2384d7
Merge pull request #120822 from r-ryantm/auto-update/lean 
lean: 3.28.0 -> 3.29.0
 2021-04-27 22:28:19 +02:00
erikbackman 95b40e4143 (numworks-epsilon): init at 15.3.2 2021-04-27 19:07:25 +02:00
R. RyanTM 4ccb9422c7 lean: 3.28.0 -> 3.29.0 2021-04-27 05:34:13 +00:00
github-actions[bot] e30742adc3
Merge staging-next into staging 2021-04-26 12:06:35 +00:00
Vincent Laporte 35dfa0e927 alt-ergo: 2.3.3 → 2.4.0 2021-04-26 08:32:18 +02:00
github-actions[bot] 28c3da370d
Merge staging-next into staging 2021-04-26 06:05:56 +00:00
R. RyanTM 224fc21cc3 tetgen: 1.5.1 -> 1.6.0 2021-04-26 01:32:28 -04:00
github-actions[bot] 8634c6f7d1
Merge staging-next into staging 2021-04-26 00:17:03 +00:00
Mauricio Collares e1ad2f5aa4 sage: remove cypari2 override 
This reverts commit c12ef05bda.
 2021-04-25 18:21:58 -03:00
Michael Raskin 14f65f0dc5
Merge pull request #116365 from omasanori/sage-9.3 
sage: 9.2 -> 9.3
 2021-04-25 21:17:32 +00:00
github-actions[bot] 9a945aac72
Merge staging-next into staging 2021-04-25 18:14:18 +00:00
Eduardo Sánchez Muñoz 6b9e396a07 qalculate-gtk: 3.17.0 -> 3.18.0 2021-04-25 16:17:26 +02:00
github-actions[bot] 944e32775d
Merge staging-next into staging 2021-04-24 00:16:20 +00:00
Alyssa Ross 4f4d95bbc2
Merge remote-tracking branch 'nixpkgs/master' into staging-next 
Conflicts:
	pkgs/development/python-modules/pyvex/default.nix
	pkgs/top-level/python-packages.nix
 2021-04-23 13:49:12 +00:00
Michael Raskin 2a04a9ce44
Merge pull request #120168 from r-ryantm/auto-update/clingo 
clingo: 5.4.1 -> 5.5.0
 2021-04-23 08:51:33 +00:00
github-actions[bot] 0d97d9f23b
Merge staging-next into staging 2021-04-23 00:15:42 +00:00
github-actions[bot] 481a9bc47c
Merge master into staging-next 2021-04-23 00:15:39 +00:00
R. RyanTM 82bc3d6c28 clingo: 5.4.1 -> 5.5.0 2021-04-22 07:44:27 +00:00
R. RyanTM e230004975 calc: 2.12.9.1 -> 2.13.0.1 2021-04-22 06:59:52 +00:00
Masanori Ogino 090b71f627 sage: 9.2 -> 9.3.rc4 
Co-authored-by: Mauricio Collares <mauricio@collares.org>
 2021-04-22 14:06:56 +09:00
Mauricio Collares 00d2e24395 eclib: 20210223 -> 20190909 
This reverts commits 003705ef08
and ef615b5a61.
 2021-04-22 14:06:56 +09:00
Garaba Flórián a0f410646c sage: use threejs fork 2021-04-22 14:06:56 +09:00
Mauricio Collares 090165d7c1 singular: disable vspace on aarch64 2021-04-22 14:06:56 +09:00
Mauricio Collares cd7cf5942b singular: use older autoconf macro to unbreak aarch64 2021-04-22 09:01:30 +09:00
Mauricio Collares aebef1703f singular: import aarch64 support patch 2021-04-22 09:01:07 +09:00
Timo Kaufmann ceaf48fdb2 singular: 4.1.1p2 -> 4.2.0p2 
Adds proper tests. Also removes the "enableFactory" option because
singular actually enables factory by default and explicitly disabling it
breaks the build. So the option was never really available.
 2021-04-22 09:01:07 +09:00
Mauricio Collares cd215e793a pynac: 0.7.26 -> 0.7.27 2021-04-22 09:01:07 +09:00
Mauricio Collares 79046fb4f8 gap: 4.10.2 -> 4.11.0 2021-04-22 09:01:07 +09:00
github-actions[bot] a260b67879
Merge staging-next into staging 2021-04-21 12:06:26 +00:00
github-actions[bot] 9b3e698b14
Merge master into staging-next 2021-04-21 12:06:23 +00:00
Sandro 59f840f3d5
Merge pull request #119055 from eduardosm/kicad 2021-04-21 06:28:21 +02:00
Mario Rodas 8b2b6e4e11
Merge pull request #119682 from marsam/update-beluga 
beluga: 2020-03-11 -> 1.0
 2021-04-20 22:22:02 -05:00
github-actions[bot] 6929a896cf
Merge staging-next into staging 2021-04-20 12:06:48 +00:00
github-actions[bot] 960439e003
Merge master into staging-next 2021-04-20 12:06:46 +00:00
Maximilian Bosch 8389dcb67d
Merge pull request #119911 from jbedo/octopus 
octopus: 0.7.1 -> 0.7.3
 2021-04-20 10:58:42 +02:00
github-actions[bot] cf0edc0dea
Merge staging-next into staging 2021-04-20 06:06:28 +00:00
github-actions[bot] e605a07cc0
Merge master into staging-next 2021-04-20 06:06:25 +00:00
R. RyanTM 44a83a3cb6 gmsh: 4.8.0 -> 4.8.1 2021-04-19 22:37:39 -04:00
Justin Bedo def7c82f88
octopus: 0.7.1 -> 0.7.3 2021-04-20 10:13:25 +10:00
Jörg Thalheim b2a1e04eed
Merge remote-tracking branch 'upstream/staging-next' into HEAD 2021-04-17 16:37:04 +02:00
github-actions[bot] f620e30ca4
Merge master into staging-next 2021-04-17 00:15:03 +00:00
Vincent Laporte ab16ad8764 coq_8_13: 8.13.1 → 8.13.2 2021-04-16 22:32:31 +02:00
Alyssa Ross e459db3f81 glsurf: fix license 
The README says GPL 2 or any later version, not LGPL.
 2021-04-16 14:06:10 +00:00
Alyssa Ross 70e33e3ae3 glsurf: use current giflib 
This requires bumping the version of camlimages used by glsurf to a
version that supports current giflib.  The most recent versions of
camlimages (even of 4.x) don't support ocaml 4.01 any more, so I've
upgraded to 4.1.2 here, the last version that supports ocaml 4.01 (and
which happily supports current giflib).
 2021-04-16 14:06:10 +00:00
Alyssa Ross 6e3b5fd046 libungif: remove in favour of giflib 
libungif was merged into giflib in 2006, and hasn't been updated
since.  All non-broken packages still using it build fine with giflib.

See <http://giflib.sourceforge.net/history.html>.
 2021-04-16 14:06:10 +00:00
Martin Weinelt 7cf67850c0
Merge branch 'master' into staging-next 2021-04-15 01:01:26 +02:00
Sandro 28fb287d4b
Merge pull request #118610 from GregorySchwartz/init/macs2 2021-04-14 21:15:38 +02:00
Gregory W. Schwartz b7763a8287 macs2: init at 2.2.7.1 
Update pkgs/applications/science/biology/macs2/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>

Update pkgs/applications/science/biology/macs2/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>

Update pkgs/applications/science/biology/macs2/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>

Update pkgs/applications/science/biology/macs2/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>

Renamed package, updated version, set pypi, and added import test.

Update pkgs/applications/science/biology/MACS2/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>

Add comment about error for checking.

Two spaces indent.
 2021-04-14 10:17:53 -04:00
Vladimír Čunát d2eb7a7887
Merge branch 'staging' into staging-next 
A few conflicts but relatively clear ones (I think).
 2021-04-14 10:08:25 +02:00
Dmitry Kalinkin a469a7be55
sherpa: compile with --enable-pythia flag 2021-04-13 09:34:42 -04:00
Luke Granger-Brown 08b22e605b Merge remote-tracking branch 'upstream/staging-next' into down-integrate-staging 2021-04-12 18:49:01 +00:00
hjones2199 79c3609603
celestia: 1.6.1 -> 1.6.2.2 (#117999) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2021-04-12 20:17:17 +02:00
Fabian Affolter e4149e6e0b
rink: specify license 2021-04-11 23:18:32 +02:00
R. RyanTM 12518ff683 rink: 0.5.1 -> 0.6.0 2021-04-11 14:49:45 +00:00
Eduardo Sánchez Muñoz b5c90bb4da kicad: fix license 
https://kicad.org/about/licenses/
 2021-04-10 20:39:02 +02:00
Eduardo Sánchez Muñoz 427edc8b5a kicad: include desktop, icon and mime files 
Fixes https://github.com/NixOS/nixpkgs/issues/106295.
 2021-04-10 18:55:04 +02:00
Jan Tojnar 625ce6c7f6 Merge branch 'staging-next' into staging 
In python-packages.nix, resolve conflict between 50d604314e and 187d0371ab.
 2021-04-08 17:14:31 +02:00
Sandro 32b567d9e6
Merge pull request #118775 from lopsided98/qgroundcontrol-update 
qgroundcontrol: 4.1.1 -> 4.1.2
 2021-04-08 09:57:15 +02:00
Ben Wolsieffer 1e52d002bb qgroundcontrol: 4.1.1 -> 4.1.2 2021-04-08 00:04:07 -04:00
github-actions[bot] 1bd1969867
Merge staging-next into staging 2021-04-06 18:15:33 +00:00
Jan Tojnar 70babe5bcf Merge branch 'staging-next' into staging 2021-04-06 16:25:41 +02:00
voidless b6c315b4fb geogebra6: 6_0_620_0 -> 6_0_631_0 2021-04-06 10:52:30 +02:00
Dmitry Kalinkin 1d93243467
root: 6.22.06 -> 6.22.08 2021-04-06 02:41:06 -04:00
Gregory Schwartz 9bf867612d
meme-suite: init at 5.1.1 (#118603) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2021-04-05 22:43:27 +02:00
Sandro Jäckel 3453b89f4b
lzma: deprecate alias 2021-04-04 19:49:52 +02:00
Frederik Rietdijk 1e7ed8b2f3
Merge branch 'staging' into python-unstable 2021-04-04 12:59:12 +02:00
Sandro Jäckel 33a395f195
yacc: deprecate alias 
and add a new line after the alphabetically sorting to please my inner monk
 2021-04-04 03:18:58 +02:00
Frederik Rietdijk c12ef05bda sage: keep cypari2 at 2.1.1 2021-04-03 17:49:44 +02:00
Frederik Rietdijk d20a05e963 libpoly: use python3 2021-04-03 17:06:22 +02:00
Frederik Rietdijk 7865ac1046 lean2: stay with python2 
broken, so who knows...
 2021-04-03 17:06:21 +02:00
Frederik Rietdijk 7368564f99 gurobi: stay with python2 2021-04-03 17:06:08 +02:00
Frederik Rietdijk ee258981bf ginac: use python3 2021-04-03 17:06:07 +02:00
Jack Gerrits dfab218b9b vowpal-wabbit: 8.9.2 -> 8.10.0 2021-04-01 13:46:09 -04:00
Mario Rodas d2275796d1 beluga: 2020-03-11 -> 1.0 2021-04-01 04:20:00 +00:00
Sandro 498cb76bdf
Merge pull request #117799 from LeSuisse/aliza-1.98.57 
aliza: 1.98.43 -> 1.98.57
 2021-03-30 17:18:15 +02:00
Sandro 9e24497453
Merge pull request #117970 from mpoquet/simgrid-3.26-to-3.27 
simgrid: 3.26 -> 3.27
 2021-03-30 14:28:37 +02:00
Ryan Mulligan f3262c2a3e
Merge pull request #117648 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.25.0 -> 2.25.1
 2021-03-29 16:10:25 -07:00
Millian Poquet 99a5de6ebc simgrid: 3.26 -> 3.27 2021-03-29 21:20:27 +02:00
Justin Bedo 76bd953162 bedops: init 2.4.39 2021-03-28 22:27:51 -04:00
Maximilian Bosch b8779b59d5
Merge pull request #117760 from r-ryantm/auto-update/calc 
calc: 2.12.9.0 -> 2.12.9.1
 2021-03-28 23:35:49 +02:00
Maximilian Bosch 4fc2ef2c5e
stellarium: 0.20.4 -> 0.21.0 
ChangeLog: https://github.com/Stellarium/stellarium/releases/tag/v0.21.0
 2021-03-28 22:46:57 +02:00
Ryan Mulligan 9a35bc87e8
Merge pull request #117607 from r-ryantm/auto-update/marvin 
marvin: 21.2.0 -> 21.3.0
 2021-03-27 20:35:56 -07:00
Thomas Gerbet f801e2e92c aliza: 1.98.43 -> 1.98.57 2021-03-27 23:49:33 +01:00
R. RyanTM 190a6f04b6 calc: 2.12.9.0 -> 2.12.9.1 2021-03-27 07:21:16 +00:00
Sandro 53734a4355
Merge pull request #117730 from veprbl/pr/snakemake_6_0_5 
snakemake: 5.28.0 -> 6.0.5
 2021-03-27 02:44:44 +01:00
Dmitry Kalinkin 8887f4655e
snakemake: 5.28.0 -> 6.0.5 2021-03-26 18:32:26 -04:00
Gabriel Ebner 109d6b3bdb
Merge pull request #117712 from gebner/elan0110 
elan: 0.10.3 -> 0.11.0
 2021-03-26 19:58:29 +01:00
Dominic Steinitz 9eb60bee0e Fix https://github.com/NixOS/nixpkgs/issues/117715 2021-03-26 18:18:42 +00:00
Gabriel Ebner 0661cf4882 elan: 0.10.3 -> 0.11.0 
Also adapt the patchelf patch from rustup, since Lean 4 now dynamically
links to gmp.
 2021-03-26 19:16:33 +01:00
R. RyanTM 49e4c1e323 picard-tools: 2.25.0 -> 2.25.1 2021-03-26 03:16:44 +00:00
Mario Rodas 01f3ceeaa9
Merge pull request #116630 from r-ryantm/auto-update/lean 
lean: 3.27.0 -> 3.28.0
 2021-03-25 19:15:00 -05:00
Florian Klink 7d19272ef2
Merge pull request #115820 from flokli/xmedcon 
xmedcon: init at 0.21.0
 2021-03-25 23:01:58 +01:00
Dmitry Kalinkin bf5c995ad2
Merge pull request #116487 from veprbl/pr/professor_init 
professor: init at 2.3.3
 2021-03-25 16:07:55 -04:00
R. RyanTM 3b3f141837 marvin: 21.2.0 -> 21.3.0 2021-03-25 17:58:45 +00:00
Frederik Rietdijk 5a5cb718a5 bedtools: use python3 2021-03-25 10:42:32 +01:00
Frederik Rietdijk 2c00aed6b1 bcftools: use python3 2021-03-25 10:39:47 +01:00
Timo Kaufmann 82e1bfa53d
Merge pull request #117123 from collares/cypari-update 
cypari2, cysignals: updates
 2021-03-24 21:38:04 +00:00
Sandro 489ca6979e
Merge pull request #117335 from bzizou/spades 
SPAdes: 3.15.1 -> 3.15.2 + fix license and platform
 2021-03-24 19:54:23 +01:00
Mauricio Collares 812ffed96b gap: backport aarch64 patch 2021-03-23 22:09:29 -03:00
Mauricio Collares 594eda3b7d sage: patch intermittently failing test 2021-03-23 22:09:29 -03:00
Mauricio Collares 15fd117e71 cypari2: 2.1.1 -> 2.1.2 
* cypari2: 2.1.1 -> 2.1.2, patch to fix segfault

* sage: update test expectations
 2021-03-23 22:09:29 -03:00
Ryan Mulligan db21819e91
Merge pull request #117345 from r-ryantm/auto-update/jmol 
jmol: 14.31.34 -> 14.31.35
 2021-03-23 09:14:57 -07:00
R. RyanTM 8ab6893632 jmol: 14.31.34 -> 14.31.35 2021-03-23 11:29:06 +00:00
Bruno Bzeznik f0eef16f9c SPAdes: 3.15.1 -> 3.15.2 + fix license and platform 2021-03-23 10:51:01 +01:00
Paul Liétar 6f8eb1e65a coq: enable coqide on darwin 
This was disabled a while ago, when itstool was broken on darwin.
Now that itstool works again, it can be re-enabled.
 2021-03-23 08:17:13 +01:00
mtreca ff64acacba sumo: init at 1.8.0 2021-03-22 12:17:15 +01:00
Sandro 1c3d923aaa
Merge pull request #115685 from r-ryantm/auto-update/wxmaxima 
wxmaxima: 20.06.6 -> 21.02.0
 2021-03-22 01:08:42 +01:00
Sandro 593cc0d5ee
Merge pull request #111224 from r-ryantm/auto-update/gwyddion 
gwyddion: 2.56 -> 2.57
 2021-03-21 05:22:26 +01:00
Florian Klink 275cc4e9c7 xmedcon: init at 0.21.0 
This allows reading DICOM images, including 3d stacks.
 2021-03-20 21:36:38 +01:00
Sandro edac82660c
Merge pull request #117039 from raboof/gnucap-init-at-20210107 
gnucap: init at 20210107
 2021-03-20 19:49:27 +01:00
Arnout Engelen 52b7bd1e77
gnucap: init at 20210107 
Submitting on behalf of kvtb,
https://discourse.nixos.org/t/casual-nixpkgs-contributions/9607/13
 2021-03-20 16:36:48 +01:00
Mauricio Collares c0b869f19f sage: re-add pkgconfig input, it's not duplicated 2021-03-20 06:43:23 -03:00
github-actions[bot] c804f22a81
Merge master into staging-next 2021-03-19 12:26:52 +00:00
Doron Behar 23ef497c17
Merge pull request #111237 from r-ryantm/auto-update/gtkwave 
gtkwave: 3.3.107 -> 3.3.108
 2021-03-19 10:24:36 +00:00
github-actions[bot] 6ffd2fe000
Merge master into staging-next 2021-03-19 06:17:55 +00:00
Jack Gerrits a364fb6557 vowpal-wabbit: init at 8.9.2 2021-03-18 18:41:07 -07:00
Jan Tojnar 2445e9a681
Merge branch 'master' into staging-next 2021-03-18 19:24:39 +01:00
Thomas Mader 09acdfde94
sambamba: 0.7.1 -> 0.8.0 
Getting rid of dmd dependency and compile with ldc
 2021-03-18 17:41:30 +02:00
Jan Tojnar 0136206b12
Merge branch 'master' into staging-next 2021-03-18 13:35:59 +01:00
R. RyanTM fadcc52955 lean: 3.27.0 -> 3.28.0 2021-03-17 14:16:02 +00:00
Sandro fe4a249718
Merge pull request #116594 from NixOS/SuperSandro2000-patch-1 
sage: remove duplicated pkgconfig
 2021-03-17 11:10:10 +01:00
Sandro 2d01f4a96a
sage: remove duplicated pkgconfig 2021-03-17 09:24:07 +01:00
Samuel Gräfenstein d90e7ac2e1
kicad: gnome3.dconf -> dconf 
Fix building with `config.allowAliases = false;`.
 2021-03-17 00:00:17 +01:00
Samuel Gräfenstein b72ee5775c
treewide: gnome2.gtk -> gtk2 
Fix building with `config.allowAliases = false;`.
 2021-03-17 00:00:16 +01:00
Samuel Gräfenstein 672cd0c8e7
treewide: gnome3.gtkmm -> gtkmm3 
Fix building with `config.allowAliases = false;`.
 2021-03-17 00:00:15 +01:00
Samuel Gräfenstein 9517398973
treewide: gnome3.defaultIconTheme -> gnome3.adwaita-icon-theme 
Fix building with `config.allowAliases = false;`.
 2021-03-17 00:00:15 +01:00
Dmitry Kalinkin 7adf3f8127
professor: init at 2.3.3 2021-03-16 11:14:00 -04:00
github-actions[bot] c7b23f6440
Merge master into staging-next 2021-03-14 18:17:08 +00:00
R. RyanTM 7c14c1a8d0 pcb: 4.2.2 -> 4.3.0 2021-03-14 13:34:35 -04:00
Martin Weinelt 0241873f7f
Merge branch 'master' into staging-next 2021-03-14 17:35:32 +01:00
mucaho ddf1821112 tla-toolbox: 1.7.0 -> 1.7.1 
* updates package version
* fixes #114741
* fixes TLC model check call
 2021-03-14 12:27:35 -04:00
Ryan Mulligan 0e63a1bb33
Merge pull request #115579 from r-ryantm/auto-update/stacks 
stacks: 2.53 -> 2.55
 2021-03-14 07:47:22 -07:00
Ryan Mulligan 03754f91eb
Merge pull request #115574 from r-ryantm/auto-update/SPAdes 
SPAdes: 3.14.1 -> 3.15.1
 2021-03-14 07:46:58 -07:00
github-actions[bot] 3b97019142
Merge master into staging-next 2021-03-14 06:17:28 +00:00
R. RyanTM 29bf7e2b89 jmol: 14.31.32 -> 14.31.34 2021-03-14 01:06:53 -05:00
R. RyanTM 621f19d89c calc: 2.12.8.2 -> 2.12.9.0 2021-03-13 23:43:28 -05:00
github-actions[bot] d6257d451b
Merge master into staging-next 2021-03-11 18:23:54 +00:00
Guillaume Girol a72148f3bc
Merge pull request #114881 from collares/sage-dependencies 
sage dependency updates
 2021-03-11 17:52:16 +00:00
github-actions[bot] 6a3a358b0d
Merge master into staging-next 2021-03-10 18:23:15 +00:00
Austin Seipp b54b679c90
Merge pull request #115717 from r-ryantm/auto-update/verilator 
verilator: 4.108 -> 4.110
 2021-03-10 08:49:38 -06:00
github-actions[bot] aea4725648
Merge master into staging-next 2021-03-10 12:21:24 +00:00
Sandro bb0bb13f32
Merge pull request #115621 from jbedo/octopus 
octopus: 0.7.0 -> 0.7.1
 2021-03-10 10:03:42 +01:00
R. RyanTM 5a9a1b3545 verilator: 4.108 -> 4.110 2021-03-10 07:47:54 +00:00
R. RyanTM 6dc1177c24 wxmaxima: 20.06.6 -> 21.02.0 2021-03-10 03:37:07 +00:00
github-actions[bot] 149a81c88d
Merge master into staging-next 2021-03-10 00:39:07 +00:00
Mauricio Collares f80271c7f0 sage: remove usage of deprecated numpy aliases 2021-03-09 21:28:46 -03:00
Mauricio Collares 3f02cdae14 sage: reenable pexpect interrupt test 2021-03-09 21:28:46 -03:00
Mauricio Collares edc78bb31f sage: update test expectations for arb and giac, prepare for pari 2.13 2021-03-09 20:54:55 -03:00
Mauricio Collares a0f55e48fa sage: use fetchSageDiff whenever possible 2021-03-09 20:54:55 -03:00
R. RyanTM 4142ae19e8 palp: 2.11 -> 2.20 2021-03-09 20:54:55 -03:00
Mauricio Collares d508147edc giac: 1.5.0-87 -> 1.6.0-47 2021-03-09 20:54:55 -03:00
R. RyanTM c0c700cb99 hal-hardware-analyzer: 3.2.5 -> 3.2.6 2021-03-09 15:29:51 -08:00
Justin Bedo 4e1a560ae4
octopus: 0.7.0 -> 0.7.1 2021-03-10 08:44:18 +11:00
R. RyanTM cb9f13c609 stacks: 2.53 -> 2.55 2021-03-09 17:19:55 +00:00
R. RyanTM 95d96bbfe5 SPAdes: 3.14.1 -> 3.15.1 2021-03-09 17:01:01 +00:00
Martin Weinelt 16f9e4da3a
Merge branch 'master' into staging-next 2021-03-09 17:05:41 +01:00
R. RyanTM 97a6e6e702 qalculate-gtk: 3.16.0 -> 3.17.0 2021-03-09 09:26:04 +00:00
github-actions[bot] dd7cbca2a6
Merge master into staging-next 2021-03-09 06:17:35 +00:00
Mario Rodas 7e99e0f339
Merge pull request #115404 from r-ryantm/auto-update/gmsh 
gmsh: 4.7.1 -> 4.8.0
 2021-03-08 19:45:08 -05:00
github-actions[bot] 3db2dee35f
Merge master into staging-next 2021-03-09 00:39:09 +00:00
R. RyanTM da4b660561 jmol: 14.31.24 -> 14.31.32 2021-03-08 15:48:47 -05:00
github-actions[bot] 5c2a7abde7
Merge master into staging-next 2021-03-08 18:22:56 +00:00
Frederik Rietdijk 277d488026 Merge staging into staging-next 2021-03-08 19:20:18 +01:00
Ryan Mulligan 91056dcd70
Merge pull request #115122 from r-ryantm/auto-update/messer-slim 
messer-slim: 3.2.1 -> 3.6
 2021-03-08 07:16:00 -08:00
R. RyanTM 435eaafaf1 gmsh: 4.7.1 -> 4.8.0 2021-03-08 11:54:52 +00:00
Sandro Jäckel 0207c32eff
giac: remove ? null 2021-03-08 02:01:15 +01:00
Sandro Jäckel b7befb3522
palp: format 2021-03-08 02:01:15 +01:00
github-actions[bot] 65cddb74d7
Merge staging-next into staging 2021-03-07 06:17:25 +00:00
Sandro 7e8cfa2c1b
Merge pull request #114747 from collares/eclib-update 2021-03-07 02:26:42 +01:00
github-actions[bot] f9d4095295
Merge staging-next into staging 2021-03-07 00:41:13 +00:00
Ryan Mulligan b20e5c31f6
Merge pull request #115010 from r-ryantm/auto-update/kstars 
kstars: 3.5.1 -> 3.5.2
 2021-03-06 16:39:59 -08:00
Mauricio Collares ef615b5a61 sage: adapt for eclib output format changes 2021-03-06 12:28:52 -03:00
github-actions[bot] ed3d50b6ce
Merge staging-next into staging 2021-03-05 06:17:28 +00:00
Sandro 2c0e6a0e69
Merge pull request #114586 from hjones2199/indi-full 2021-03-05 04:25:48 +01:00
Jan Tojnar 6d1958ad2d
Merge branch 'staging-next' into staging 2021-03-04 22:16:45 +01:00
R. RyanTM 12cde5ea85 messer-slim: 3.2.1 -> 3.6 2021-03-04 18:40:37 +00:00
Sandro 13a3551cec
Merge pull request #115041 from SuperSandro2000/r 
R: switch to pname + version
 2021-03-04 13:38:16 +01:00
Lio李歐 51512d843a
quantum-espresso: enable on darwin 2021-03-03 19:40:47 -08:00
Sandro Jäckel 086e9e0978
R: switch to pname + version 2021-03-04 03:47:33 +01:00
R. RyanTM c340d7c85d kstars: 3.5.1 -> 3.5.2 2021-03-03 18:28:16 +00:00
sternenseemann 6f2fbf5f0b treewide: add missing lib inputs 
This fixes hopefully all remaining missing lib inputs, likely introduced
as a regression by our recent treewide switch from stdenv.lib to lib.
These instances are all I could find using nix-instantiate --parse using
the following command:

    find "$NIXPKGS" -name '*.nix' \
      -and ! -path "$NIXPKGS/pkgs/development/interpreters/python/cpython/docs/template.nix" \
      -and ! -path '$NIXPKGS/.git/**' \
      -print0 | xargs -0 nix-instantiate --parse >/dev/null
 2021-03-03 13:40:45 +01:00
github-actions[bot] eef2c4e401
Merge staging-next into staging 2021-03-03 00:38:15 +00:00
Eduardo Sánchez Muñoz b1718d879a
librepcb: fix use of wrapQtApp (#114891) 2021-03-03 01:03:37 +01:00
github-actions[bot] e668a36492
Merge staging-next into staging 2021-03-02 12:17:32 +00:00
Vincent Laporte cd43a53947 coq_8_13: 8.13.0 → 8.13.1 2021-03-02 09:04:40 +01:00
Jan Tojnar 913394a1d9
Merge branch 'staging-next' into staging 2021-03-01 19:30:56 +01:00
R. RyanTM 4dd9084ca9 lean: 3.26.0 -> 3.27.0 2021-02-28 15:14:35 +00:00
Hunter Jones 62249b7904 kstars: update license to gpl2Plus 2021-02-27 15:11:20 -06:00
Hunter Jones 18040bda9b phd2: use third party indi drivers 2021-02-27 13:26:17 -06:00
Hunter Jones 9c4e268d65 kstars: use third party indi drivers 2021-02-27 13:25:07 -06:00
github-actions[bot] 5267db2989
Merge staging-next into staging 2021-02-27 18:16:44 +00:00
Sandro 299a683718
Merge pull request #114417 from veprbl/pr/sherpa_darwin_fix 
sherpa: fix on darwin
 2021-02-27 14:23:38 +01:00
github-actions[bot] 2a38839b78
Merge staging-next into staging 2021-02-27 12:20:00 +00:00
Sandro 7918f4b407
Merge pull request #114539 from SuperSandro2000/z3-java 
z3: Add output for Java bindings (*.jar and *.so)
 2021-02-27 11:15:31 +01:00
Lorenz Leutgeb 7306864977
z3: Add output for Java bindings (*.jar and *.so) 2021-02-27 09:01:25 +01:00
github-actions[bot] 52f404b187
Merge staging-next into staging 2021-02-27 06:17:01 +00:00
R. RyanTM 4d89f50881 jmol: 14.31.18 -> 14.31.24 2021-02-26 21:10:01 -05:00
github-actions[bot] e8162c62e3
Merge staging-next into staging 2021-02-27 00:37:54 +00:00
Vijay Lulla 2c9d7ee369 R: 4.0.3 -> 4.0.4 2021-02-26 22:42:21 +00:00
Guillaume Girol b4389c0736
Merge pull request #114271 from hjones2199/siril 
siril: 0.99.6 -> 0.99.8.1
 2021-02-26 20:25:19 +00:00
github-actions[bot] ec3729e487
Merge staging-next into staging 2021-02-26 18:16:46 +00:00
Timo Kaufmann be504fc82a
Merge pull request #113603 from collares/sage-test-fixes 
sage: disable intermittent test and fix threejs breakage
 2021-02-26 13:27:44 +00:00
Robert Schütz 54757b35c1 Merge branch 'staging-next' into staging 2021-02-26 10:56:17 +01:00
Frederik Rietdijk c456a2512f Merge master into staging-next 2021-02-26 10:25:13 +01:00
Mauricio Collares 4718aea896 sage: use slightly more robust way of getting threejs version 2021-02-25 22:31:27 -03:00
Mauricio Collares 7efa803a4b sage: disable intermittent test 2021-02-25 22:31:27 -03:00
Dmitry Kalinkin 5b9a3edb20 sherpa: fix on darwin 
Fixes: 81cf1908 ('sherpa: fix build w/glibc-2.32')
 2021-02-25 17:24:13 -05:00
Hunter Jones 804999f37e siril: 0.99.6 -> 0.99.8.1 2021-02-25 10:46:05 -06:00
Eduardo Sánchez Muñoz ade1748bd8
diylc: 4.15.1 -> 4.17.0 (#114260) 
* diylc: set eduardosm as maintainer

* diylc: 4.15.1 -> 4.17.0

* diylc: run preInstall and postInstall hooks
 2021-02-25 09:14:51 +01:00
Mario Rodas 9a6f587ab8
Merge pull request #114100 from r-ryantm/auto-update/star 
star: 2.7.7a -> 2.7.8a
 2021-02-24 22:36:58 -05:00
Vincent Laporte a346c68411 acgtk: 1.5.1 → 1.5.2 2021-02-24 08:13:06 +01:00
Vladimir Serov f4eddc2fad hol: 10 -> 14 
also cleared broken status; builds on NixOS

Signed-off-by: Vladimir Serov <me@cab404.ru>
 2021-02-23 21:31:26 -05:00
Mario Rodas 19d38d712a
Merge pull request #112945 from r-ryantm/auto-update/ngspice 
ngspice: 33 -> 34
 2021-02-23 20:40:05 -05:00
Vincent Laporte f9a4e6b1e2 alt-ergo: use Dune 2 2021-02-23 22:11:44 +01:00
R. RyanTM 615ff1b2ab star: 2.7.7a -> 2.7.8a 2021-02-23 10:38:00 +00:00
Sandro ad06c82b9c
Merge pull request #113965 from SuperSandro2000/fix-collection17 2021-02-23 08:44:14 +01:00
Fabian Affolter a3343fc6b9 calc: specify license 2021-02-22 14:21:33 -05:00
github-actions[bot] ed07c63105
Merge staging-next into staging 2021-02-22 06:17:08 +00:00
github-actions[bot] 227aa2c9b0
Merge master into staging-next 2021-02-22 06:17:05 +00:00
Thomas Bereknyei d3833fbe25 calc: nixpkgs-review fixes 2021-02-22 00:56:59 -05:00
R. RyanTM 840822c280 calc: 2.12.8.1 -> 2.12.8.2 2021-02-22 00:56:59 -05:00
davidak 3bbd4267ab
Merge pull request #112951 from rmcgibbo/cbc 
cbc: 2.10.3 -> 2.10.4
 2021-02-22 05:02:25 +01:00
Sandro Jäckel dcc2d18867
nasc: remove unused input 2021-02-22 02:27:56 +01:00
Sandro Jäckel af5886a2a3
kicad: remove unused inputs 2021-02-22 02:27:52 +01:00
R. RyanTM ff27c8e0ad last: 1178 -> 1179 2021-02-21 21:24:17 +00:00
github-actions[bot] 41e65d4eb6
Merge staging-next into staging 2021-02-21 06:16:34 +00:00