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631 commits

Author SHA1 Message Date
Jonas Chevalier b1e30d76d4
fahclient: 8.1.18 -> 8.3.1 (#281830) 
* fahclient: 8.1.18 -> 8.3.1

* Update pkgs/applications/science/misc/foldingathome/client.nix

Co-authored-by: Robert Schütz <github@dotlambda.de>

* Update pkgs/applications/science/misc/foldingathome/client.nix

Co-authored-by: Robert Schütz <github@dotlambda.de>

---------

Co-authored-by: Robert Schütz <github@dotlambda.de>
 2024-01-29 18:17:16 +01:00
R. RyanTM ec66ff787e
snakemake: 8.2.1 -> 8.3.2 (#284218) 2024-01-27 09:26:23 -05:00
Fabian Affolter 48433b4d36 cwltool: 3.1.20230213100550 -> 3.1.20240112164112 
Diff: https://github.com/common-workflow-language/cwltool/compare/refs/tags/3.1.20230213100550...3.1.20240112164112

Changelog: https://github.com/common-workflow-language/cwltool/releases/tag/3.1.20240112164112
 2024-01-21 10:32:48 +01:00
Dmitry Kalinkin 346cb05310 snakemake: 8.0.1 -> 8.2.1 2024-01-17 16:28:55 -05:00
Robert Scott 12a82c9c78
Merge pull request #279386 from r-ryantm/auto-update/rink 
rink: 0.6.3 -> 0.7.0
 2024-01-12 22:08:27 +00:00
Dmitry Kalinkin be5b82b259
Merge pull request #275882 from veprbl/pr/snakemake_8_0_1 
snakemake: 7.32.4 -> 8.0.1
 2024-01-07 11:03:10 -05:00
R. Ryantm a373789932 rink: 0.6.3 -> 0.7.0 2024-01-07 14:39:33 +00:00
Weijia Wang 553ccf3dfe tulip: fix build on darwin 2024-01-03 22:16:58 +01:00
R. Ryantm c777f0bfa7 tulip: 5.7.2 -> 5.7.3 2023-12-28 07:46:06 +00:00
Dmitry Kalinkin 7ff81781f2 snakemake: 7.32.4 -> 8.0.1 2023-12-21 14:32:05 -05:00
Dmitry Kalinkin d245890087
root: 6.28.10 -> 6.30.02 (#274348) 2023-12-17 05:20:40 -05:00
Dmitry Kalinkin d4af6e420f
root: build with root7 and webgui (#272723) 2023-12-15 08:43:44 -05:00
Dmitry Kalinkin 1a5412e140
toil: 5.7.1 -> 5.12.0 (#273274) 2023-12-12 16:04:33 -05:00
Dmitry Kalinkin 190cb5fc41 root: 6.28.08 -> 6.28.10 2023-12-07 12:36:03 -05:00
Jonas Chevalier 80d540bd31
fahclient: wrap in FHS (#271994) 
Folding@home downloads arbitrary binaries that it runs and that have the
wrong loader.

Fixes https://github.com/NixOS/nixpkgs/pull/246832#issuecomment-1837625014
 2023-12-05 10:04:09 +01:00
sternenseemann 8c59811e4e root5: broken with clang 
Seems like any clang version > 5 doesn't work. Since root >= 6.0 is
available from nixpkgs, I think it is reasonable to mark it as broken
for now. Maybe someone can figure out if it is possible to backport a
fix from root >= 6.0.
 2023-12-04 19:43:08 +01:00
R. Ryantm fc9bec86de simgrid: 3.34 -> 3.35 2023-11-28 16:59:53 +00:00
Jonas Chevalier a403a118d1
fahclient: 7.6.21 -> 8.1.18 (#246832) 
Rebuild from source
 2023-11-27 14:20:58 +01:00
Pierre Bourdon f4db50bafb
Merge pull request #269700 from NixOS/pr/root_warning_fix 
root: fix excessive build log size
 2023-11-25 10:38:13 +01:00
Dmitry Kalinkin 8ae6154b2b root: fix excessive build log size 2023-11-24 14:33:55 -05:00
Renato Garcia 3c87cb32f0
snakemake: 7.29.0 -> 7.32.4 (#266543) 2023-11-10 06:48:45 -05:00
Silvan Mosberger fb2e311d1e root5: Fix build with Python 3.11 
Was broken since the Python update from https://github.com/NixOS/nixpkgs/pull/251878

This should fix the apfelgrid and applgrid builds, not tested yet
 2023-11-09 19:01:58 +01:00
Weijia Wang 5827957a06 root: drop patches 2023-11-07 02:42:16 +01:00
R. Ryantm 9ca6747e6b boinc: 7.24.1 -> 7.24.2 2023-10-31 08:44:00 +00:00
github-actions[bot] fb3e2499b7
Merge master into staging-next 2023-10-21 00:02:17 +00:00
R. Ryantm 06c6fb463b root: 6.28.06 -> 6.28.08 2023-10-20 14:40:50 -04:00
github-actions[bot] c61915bc96
Merge master into staging-next 2023-10-17 06:01:22 +00:00
Weijia Wang 9f628e292e tulip: 5.6.1 -> 5.7.2 2023-10-17 00:10:30 +02:00
Maximilian Bosch 5497c7ac5d
root: fix build w/ glibc-2.38 
Failing Hydra build: https://hydra.nixos.org/build/230518136
 2023-09-24 15:12:03 +02:00
Fabián Heredia Montiel d32595dad1
Merge pull request #249590 from Luflosi/update/boinc 
boinc: 7.22.2 -> 7.24.1
 2023-09-13 23:26:57 -05:00
R. Ryantm 7310af91d4 cytoscape: 3.10.0 -> 3.10.1 2023-09-05 11:47:11 +00:00
Dmitry Kalinkin 3c15feef77
root: 6.26.10 -> 6.28.06 (#215187) 2023-09-04 12:24:30 -04:00
ajs124 de1d98cabe vite: 1.2pre1543 -> unstable-2022-05-17 2023-09-04 13:54:49 +02:00
Weijia Wang 2a01448de1
Merge pull request #248805 from r-ryantm/auto-update/openmvs 
openmvs: 2.1.0 -> 2.2.0
 2023-09-01 13:52:30 +02:00
Michael Raskin 5ab5c5d6c7 golly: 4.1 -> 4.2 2023-08-31 00:45:02 +02:00
Luflosi dc24d56846
boinc: 7.22.2 -> 7.24.1 
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.24%2F7.24.0
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.24%2F7.24.1
 2023-08-16 18:35:16 +02:00
Pol Dellaiera 3eb7f7a63b
Merge pull request #248683 from oxij/tree/source-root-continues-3 
treewide: cleanup `sourceRoot` and `setSourceRoot` usage
 2023-08-15 05:53:52 +02:00
Artturin 25eef24033 treewide: Don't hardcode nix store in patchelf calls 2023-08-13 05:44:01 +03:00
R. Ryantm ee363c9ad3 openmvs: 2.1.0 -> 2.2.0 2023-08-13 01:21:41 +00:00
Jan Malakhovski d098c821d6 treewide: remove unneeded dots and slashes in sourceRoots 2023-08-12 08:29:56 +00:00
figsoda fba2eab4c0 reason-shell: init at 0.3.10 
https://github.com/jaywonchung/reason
 2023-08-08 14:51:53 +00:00
Weijia Wang c9b8162d3d gephi: unrestrict platforms 2023-08-03 15:33:20 +02:00
Weijia Wang e658ffa994 treewide: cleanup maven packages 2023-07-31 21:13:09 +02:00
Pol Dellaiera cb8e68fd59
Merge pull request #244146 from GiggleSquid/pkgs/boinc-headless 
boinc: add headless option
 2023-07-29 12:52:12 +02:00
Someone Serge 471dbe9bcf
treewide: consume config.cudaSupport as required 
Eliminate uses of `config.cudaSupport or false` and alike, since the
option is now declared in config.nix with a default value

fd .nix -t f -x sed 's/config\.cudaSupport or false, cudaPackages [?] [{][}]/config.cudaSupport, cudaPackages ? { }/' '{}' -i
fd .nix -t f -x sed 's/config\.cudaSupport or false/config.cudaSupport/' '{}' -i
fd .nix -t f -x sed 's/cudaSupport = pkgs.config.cudaSupport/inherit (pkgs.config) cudaSupport/' '{}' -i
fd .nix -t f -x sed 's/cudaSupport = config.cudaSupport/inherit (config) cudaSupport/' '{}' -i
 2023-07-20 18:08:19 +03:00
Someone Serge bf9e6fe9b8
tree-wide: rm cudaSupport ? false formal parameters 
'cudaSupport ? false' -> 'cudaSupport ? config.cudaSupport or false' to respect global defaults

Packages expressions that take `cudaSupport ? false` are likely to
ignore `config.cudaSupport`. Instead, we want them to make `cudaSupport`
a required argument, or to explicitly refer to `config`
 2023-07-20 17:27:07 +03:00
Jack Connors 3f99b556de boinc: add headless option 
Added headless option and packages entry. Switches config flag --disable-manager and omits X/GUI related libs
 2023-07-18 21:47:12 +01:00
github-actions[bot] 9905fde3a5
Merge master into staging-next 2023-07-14 00:02:39 +00:00
Artturi e74e68449c
Merge pull request #211075 from ppenguin/openmodelica-with-3d-animation 2023-07-14 00:00:04 +03:00
github-actions[bot] a3b43106c9
Merge master into staging-next 2023-07-13 18:01:24 +00:00