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Author SHA1 Message Date
Mauricio Collares e21968aa89
Merge pull request #294062 from collares/sage-10.3 
sage: 10.2 -> 10.3
 2024-03-20 13:21:12 +01:00
Mauricio Collares d403e1be7a sage, sageWithDoc: 10.2 -> 10.3 2024-03-20 11:46:58 +01:00
Someone e7797267a2
Merge pull request #281576 from yannham/refactor/cuda-setup-hooks-refactor 
cudaPackages: generalize and refactor setup hooks
 2024-03-19 20:06:18 +00:00
Pol Dellaiera 186c3e34a7
Merge pull request #296549 from TomaSajt/strip-java-archives-hook 
add stripJavaArchivesHook and use treewide
 2024-03-19 05:41:08 +01:00
stuebinm ff1a94e523 treewide: add meta.mainProgram to packages with a single binary 
The nixpkgs-unstable channel's programs.sqlite was used to identify
packages producing exactly one binary, and these automatically added
to their package definitions wherever possible.
 2024-03-19 03:14:51 +01:00
whonore f017802bcc dafny: 4.4.0 -> 4.5.0 2024-03-17 12:30:18 -04:00
Weijia Wang 2e911ea73b
Merge pull request #294471 from r-ryantm/auto-update/deeptools 
deeptools: 3.5.4 -> 3.5.5
 2024-03-17 15:20:16 +01:00
TomaSajt 0e20953796
treewide: use stripJavaArchivesHook instead of canonicalize-jars-hook 2024-03-17 13:35:12 +01:00
OTABI Tomoya 7fc13a0d56
Merge pull request #295598 from r-ryantm/auto-update/mafft 
mafft: 7.520 -> 7.525
 2024-03-17 11:56:50 +09:00
Weijia Wang 21a43cab3e
Merge pull request #293632 from r-ryantm/auto-update/getdp 
getdp: 3.5.0 -> 3.6.0
 2024-03-17 01:56:17 +01:00
github-actions[bot] 7ca73c43f1
Merge master into haskell-updates 2024-03-16 00:11:51 +00:00
Nick Cao 86e812c02a
Merge pull request #295472 from r-ryantm/auto-update/minimap2 
minimap2: 2.26 -> 2.27
 2024-03-15 14:04:43 -04:00
Yann Hamdaoui 63746cac08
cudaPackages: generalize and refactor setup hook 
This PR refactor CUDA setup hooks, and in particular
autoAddOpenGLRunpath and autoAddCudaCompatRunpathHook, that were using a
lot of code in common (in fact, I introduced the latter by copy pasting
most of the bash script of the former). This is not satisfying for
maintenance, as a recent patch showed, because we need to duplicate
changes to both hooks.

This commit abstract the common part in a single shell script that
applies a generic patch action to every elf file in the output. For
autoAddOpenGLRunpath the action is just addOpenGLRunpath (now
addDriverRunpath), and is few line function for
autoAddCudaCompatRunpathHook.

Doing so, we also takes the occasion to use the newer addDriverRunpath
instead of the previous addOpenGLRunpath, and rename the CUDA hook to
reflect that as well.

Co-Authored-By: Connor Baker <connor.baker@tweag.io>
 2024-03-15 15:54:21 +01:00
github-actions[bot] cb97fed572
Merge master into haskell-updates 2024-03-15 00:12:36 +00:00
Nick Cao 4d47ff9ea7
Merge pull request #295463 from NickCao/systemc-cmake 
systemc: build with cmake, expand platforms to unix
 2024-03-14 13:45:09 -04:00
Sergey Vinokurov 3a7feda68d
Update Folding@home client to 8.3.7 (#295745) 
Depend re2, libevent during build sisnce 8.3.7 appears to link with
them. Depend on git because client wan’t to know what revision it
was built from.

Add zlib and expat to FHS environment because some workunits depend on
them and cause lots of rejections if those libraries are not
available. Unfortunately they don’t appear to be bundled as part
of work distribution.
 2024-03-14 12:17:46 +01:00
github-actions[bot] 9f98a38f2e
Merge master into haskell-updates 2024-03-14 00:13:08 +00:00
R. Ryantm fd5b7188ef mafft: 7.520 -> 7.525 2024-03-13 12:21:27 +00:00
Doron Behar 39160e127b
Merge pull request #295063 from r-ryantm/auto-update/libqalculate 
{qalculate-{qt,gtk},libqalculate}: 4.9.0 -> 5.0.0,
 2024-03-13 07:46:45 +02:00
R. Ryantm 055cf7e2ac minimap2: 2.26 -> 2.27 2024-03-13 00:30:24 +00:00
github-actions[bot] 9e0e89d13c
Merge master into haskell-updates 2024-03-13 00:12:20 +00:00
Nick Cao cf7deee349
verilator: add patch for "attempted to destroy locked Thread Pool" failure in tests 2024-03-12 20:00:48 -04:00
Nick Cao 2dc4b18eb6
verilator: fix locating systemc 2024-03-12 20:00:48 -04:00
Nick Cao d44aa50819
systemc: build with cmake, expand platforms to unix 2024-03-12 20:00:47 -04:00
Pol Dellaiera 03540ae131
Merge pull request #295193 from emilytrau/fritzing-darwin 
fritzing: support darwin
 2024-03-12 22:07:30 +01:00
Pol Dellaiera 81074976b7
Merge pull request #295306 from r-ryantm/auto-update/magic-vlsi 
magic-vlsi: 8.3.463 -> 8.3.464
 2024-03-12 21:56:19 +01:00
Pol Dellaiera 37b4a69489
Merge pull request #295208 from r-ryantm/auto-update/igv 
igv: 2.17.2 -> 2.17.3
 2024-03-12 21:36:29 +01:00
Thiago Kenji Okada 1040e5688c
Merge pull request #294869 from atorres1985-contrib/primecount 
primecount, primesieve: refactor
 2024-03-12 19:20:56 +00:00
Nick Cao 6ad9c21bb7
Merge pull request #295171 from r-ryantm/auto-update/seqkit 
seqkit: 2.7.0 -> 2.8.0
 2024-03-12 14:40:56 -04:00
Doron Behar 4a414671ac qalculate-qt: 4.9.0 -> 5.0.0 
Diff: https://github.com/qalculate/qalculate-qt/compare/v4.9.0...v5.0.0
 2024-03-12 16:59:25 +02:00
Doron Behar b668267edd qalculate-gtk: 4.9.0 -> 5.0.0 
Diff: https://github.com/qalculate/qalculate-gtk/compare/v4.9.0...v5.0.0
 2024-03-12 16:59:24 +02:00
R. Ryantm 7d8d32ba15 magic-vlsi: 8.3.463 -> 8.3.464 2024-03-12 12:47:29 +00:00
R. Ryantm c66736f8e0 eigenmath: unstable-2024-03-06 -> unstable-2024-03-11 2024-03-12 07:13:32 +00:00
Vincent Laporte 0521702b1d coq_8_19: 8.19.0 → 8.19.1 2024-03-12 05:49:59 +01:00
R. Ryantm c91acf3624 igv: 2.17.2 -> 2.17.3 2024-03-12 02:48:25 +00:00
Emily Trau 5005010f1d fritzing: support darwin 2024-03-12 12:30:01 +11:00
R. Ryantm 8cc0f796eb seqkit: 2.7.0 -> 2.8.0 2024-03-12 00:29:44 +00:00
github-actions[bot] 87dfdf055e
Merge master into haskell-updates 2024-03-12 00:12:17 +00:00
Pol Dellaiera 54c52cb276
Merge pull request #294334 from ShamrockLee/sourceroot-fix 
treewide: fix hard-coded `sourceRoot` prefix for `fetchgit`-based `src`
 2024-03-11 16:50:57 +01:00
Anderson Torres 0c68a08dd7 primecount: migrate to by-name 2024-03-11 11:04:30 -03:00
Anderson Torres 0aedcfc0b0 primesieve: migrate to by-name 2024-03-11 11:04:30 -03:00
R. Ryantm 6c08d7994a calcmysky: 0.3.1 -> 0.3.2 2024-03-11 12:27:56 +00:00
Mauricio Collares 2e1ebdb6e0 singular: 4.3.2p2 -> 4.3.2p16 2024-03-11 12:15:41 +01:00
Mauricio Collares 294aaa8575 nauty: 2.7r4 -> 2.8.8 2024-03-11 12:15:41 +01:00
Mauricio Collares 4acba6cff5 conway_polynomials: remove 2024-03-11 12:15:40 +01:00
github-actions[bot] 97e35dcd05
Merge master into haskell-updates 2024-03-11 00:12:54 +00:00
R. Ryantm 1e6c427404 primesieve: 12.0 -> 12.1 2024-03-10 13:30:57 +00:00
Joachim Breitner af10a63043 Revert "elan: revert temporary directory creation" 
This reverts commit 66e4e61595.
 2024-03-09 16:50:49 +01:00
Joachim Breitner 5681570171 fix: elan: use relative paths in wrapper script 
since 3.1.1, `elan` extracts to a temporary location and then moves to a
final location, this threw the wrapper script off. Updating the patch to
use paths relative to the wrapper script, so that it works independent
of absolute location.
 2024-03-09 16:01:03 +01:00
R. Ryantm a312b41117 deeptools: 3.5.4 -> 3.5.5 2024-03-09 10:06:54 +00:00