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Author SHA1 Message Date
Guillaume Bouchard 9f0ee6c606 primesieve: init at 7.3 2019-02-04 13:03:50 +01:00
Vladimír Čunát 5effa4e0f9
Merge branch 'master' into staging-next 
Comments on conflicts:
- llvm: d6f401e1 vs. 469ecc70 - docs for 6 and 7 say the default is
  to build all targets, so we should be fine
- some pypi hashes: they were equivalent, just base16 vs. base32
 2019-02-01 09:22:29 +01:00
Markus Kowalewski 57c37456db
openblas: make the optimazation target overridable 2019-01-29 14:34:02 +01:00
Will Dietz 1f0467005d openblas: 0.3.4 -> 0.3.5, rework a bit (#53972) 
* openblas: simplify a bit, fix doCheck so tests are enabled non-cross.

* doCheck should be 'true' in (at least) the non-cross case,
  this looks like an inverted check that's largely benign
* doCheck will be set to 'false' in the cross case anyway,
  makeDerivation does this IIRC
* targetPrefix can be used without checking, probably by design

Derivation hash does change but no "real" functionality change intended.

* openblas: nix types for config attrs (hash-preserving)

* openblas: more nix-ification, merge in cross attrs, prefer to always set

(but set appropriately for cross and non-cross cases both)

* I'm not sure what NO_BINARY_MODE does,
  this change now sets explicitly false in the non-cross scenario
  (previously unset unless cross).
* Drop musl NO_AFFINITY case, will be removed in upgrade shortly

* openblas: 0.3.4 -> 0.3.5
 2019-01-15 16:36:07 +01:00
Frederik Rietdijk 05ee1015bb openblas: fix cross-compilation 2019-01-15 10:11:33 +01:00
Timo Kaufmann 04ba895ecd
suitesparse: 5.3.0 -> 5.4.0 (#53128) 2019-01-01 15:47:55 +01:00
Silvan Mosberger eb864397a0
Merge pull request #52508 from tkonolige/fix_suitesparse_darwin 
suitesparse: Fix darwin support
 2018-12-31 03:24:48 +01:00
agracie a3fc481b76 mkl: fix hash on Darwin 2018-12-26 20:57:08 -05:00
Bas van Dijk 72eae72223 openblas: fix build on x86_64-darwin 
See: https://github.com/xianyi/OpenBLAS/issues/1926
 2018-12-20 13:25:44 +01:00
Benjamin Hipple 6206a342e0 mkl: include Intel's libiomp.so in the MKL RPM unpack 
Since Intel's default openmp implementation is available in the same src
tarball, we can just include it in the package. This means that `mkl` now "just
works" without any environment variables, fragile setup-hooks, or forced
propagation.

Since the openmp implementation is only needed at runtime (and for test cases),
users can substitute a different one if they prefer by exporting it with
`LD_PRELOAD`, which is how Intel recommends handling this. If they do not do so,
`libiomp.so` lives next to `libmkl_rt.so` and thus will be in the RPATH as a
sane default.

Since this still comes from the same src tarball, we can ship it without losing
the fixed-output derivation; likewise, since Hydra is not building or caching
these, shipping these proprietary packages costs no bandwidth for the nix
community.
 2018-12-19 22:05:22 +01:00
Tristan Konolige 00005ce0bd suitesparse: Fix darwin support 
Suitesparse libraries would end up containing references to the build
directory. fixDarwinDylibNames appears to not fix this problem. We
manually use intall_name_tool to set the library paths correctly.
 2018-12-18 18:08:17 -07:00
Frederik Rietdijk 4deb04a97a openblas: 0.3.3 -> 0.3.4 2018-12-07 15:21:25 +01:00
Frederik Rietdijk a510aa2672 Merge master into staging-next 2018-12-03 12:18:43 +01:00
Will Dietz cd14ad53c3 or-tools: appease warning re:python3, try testing 2018-12-01 13:38:16 -06:00
Will Dietz 046e7980f9 or-tools: parallel 2018-12-01 13:38:16 -06:00
Will Dietz 70c2e88c96 or-tools: touchup 2018-12-01 13:38:16 -06:00
Will Dietz c4feda8b01 or-tools: v6.9.1 -> v6.10 
https://github.com/google/or-tools/releases/tag/v6.10
 2018-12-01 13:38:16 -06:00
Frederik Rietdijk fed881e510 Merge staging-next into staging 2018-11-21 12:39:46 +01:00
Matthew Bauer d492f53faf
Merge pull request #50527 from matthewbauer/ninja-check-phase 
Add check phase to ninja setup hook
 2018-11-20 16:55:12 -06:00
Timo Kaufmann 6059bf842a
Merge pull request #49994 from r-ryantm/auto-update/python3.6-cvxopt 
python36Packages.cvxopt: 1.2.1 -> 1.2.2
 2018-11-20 14:25:43 +01:00
Matthew Bauer 285eb9a894 cmake: set CTEST_OUTPUT_ON_FAILURE globally 
We should always use this.
 2018-11-19 16:16:16 -06:00
Frederik Rietdijk e343a85cfb Merge master into staging-next 2018-11-19 09:55:32 +01:00
Matthew Bauer 2c47a4229f treewide: remove ctest usages 
These are already in the generated makefiles!
 2018-11-18 19:31:02 -06:00
Matthew Bauer 2c1d3a9a82 Merge remote-tracking branch 'upstream/master' into staging 2018-11-18 19:02:09 -06:00
Orivej Desh e66d263f6b eigen3_3: move version overrides to all-packages.nix 2018-11-18 10:53:25 +00:00
Frederik Rietdijk 63c6875f26 Merge master into staging-next 2018-11-18 10:32:12 +01:00
Renaud cde945a165
Merge pull request #48044 from schneefux/pkg/fetchfromgithub 
treewide: Use fetchFromGitHub instead of fetchurl
 2018-11-14 09:48:22 +01:00
Matthew Bauer f2a20b6e52 treewide: use wafHook 
Replace "waf" phases with wafHook that manages everything
automatically. Should make things more modular.

Packages affected here are:

- a2jmidid
- ams-lv2
- ardour
- fomp
- guitarix
- ingen
- jalv
- mda-lv2
- non
- patchage
- hamster-time-tracker
- kupfer
- xiphos
- xfce4-dockbarx-plugin
- xfce4-namebar-plugin
- dropbox
- clasp
- aubio
- liliv
- lv2
- lvtk
- ntk
- raul
- sratom
- suil
- ganv
- ndn-cxx
- ns3
- serd
- sord
- termbox
- wxmupen64plus
- jackaudio
- pflask
- blockhash
- glmark2
- weighttp
 2018-11-13 19:13:48 -06:00
Daiderd Jordan 5b8c4b0646
suitesparse: fixup darwin libraries 
The build created libraries with an install_name that points to the
build directory instead of the installation prefix.  Causing errors like
this when other packages try to link against it's libraries.

    Library not loaded: /private/tmp/nix-build-suitesparse-5.3.0.drv-0/SuiteSparse/lib/libcholmod.3.0.12.dylib
 2018-11-13 00:25:32 +01:00
markuskowa 45a4adb1b3
Merge branch 'master' into atlas-remove 2018-11-11 02:22:04 +01:00
Markus Kowalewski 06f3676770
scalapack: set platform to linux 2018-11-11 02:17:20 +01:00
markuskowa bf8c031074
Merge pull request #49199 from markuskowa/fet-scalapack 
scalapack: switch to openblas and add test
 2018-11-05 21:12:01 +01:00
Matthew Bauer 95373d3634 atlas: remove 
atlas is broken and can apparently be removed.

Fixes #49594
 2018-11-04 20:23:12 -06:00
Patrick Hilhorst 4cfeb9da53
cudatoolkit, cudnn: many updates 
cudatoolkit_9_1: 9.1.85.1 -> 9.1.85.3
cudatoolkit_9_2: init at 9.2.148.1
cudatoolkit_9: 9.1.85.1 -> 9.2.148.1
cudatoolkit_10, cudatoolkit_10_0: init at 10.0.130

cudnn_cudatoolkit_9_0: 7.0.5 -> 7.3.0
cudnn_cudatoolkit_9_1: init at 7.1.3
cudnn_cudatoolkit_9_2: init at 7.2.1
cudnn_cudatoolkit_9: 7.0.5 (9.1) -> 7.3.1 (9.2)
cudnn_cudatoolkit_10, cudnn_cudatoolkit_10_0: init at 7.3.1
 2018-10-30 19:09:20 +01:00
Markus Kowalewski 41a579aa68
scalapack: switch to openblas + add test 
* change from blas,lapack to openblas
* add check phase
* enable parallel building
* fix license
 2018-10-27 01:06:07 +02:00
Mateusz Kowalczyk 02fb26136c or-tools: new package (v6.9.1) 2018-10-25 14:15:13 +09:00
Mateusz Kowalczyk b41f8936b9 QuadProgpp: Add new package. 
Necessary for #48895.
 2018-10-24 09:19:26 +09:00
Michael Raskin acb7d85993 lrs: init at 7.0 2018-10-23 11:41:29 +03:00
Renaud 0cc07aeee6
Merge pull request #48172 from jluttine/cholmod-extra-1.2.0 
cholmod-extra: init at 1.2.0
 2018-10-21 17:28:30 +02:00
Thomas Tuegel 2e4397f631
Merge pull request #35213 from jluttine/suitesparse-5.1.2 
suitesparse: 4.4.4 -> 5.3.0
 2018-10-20 08:07:27 -05:00
Jörg Thalheim 351319e557
Merge pull request #48419 from r-ryantm/auto-update/ipopt 
ipopt: 3.12.10 -> 3.12.11
 2018-10-15 21:36:42 +01:00
Matthew Bauer 0b298d516a
Merge pull request #47182 from bhipple/add/mkl 
mkl: init at 2019.0.117
 2018-10-15 15:17:57 -05:00
R. RyanTM ab050719ba ipopt: 3.12.10 -> 3.12.11 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ipopt/versions
 2018-10-14 08:11:02 -07:00
Jaakko Luttinen f065de344d
cholmod-extra: init at 1.2.0 2018-10-10 22:08:25 +03:00
Jaakko Luttinen 8fb27604fb
suitesparse: 4.4.4 -> 5.3.0 2018-10-10 07:36:00 +03:00
schneefux d81a96e601 mirtk: use fetchFromGitHub instead of fetchgit 2018-10-08 14:33:55 +02:00
Timo Kaufmann 65589faa2f zn_poly: 0.9 -> 0.9.1 
Sage has taken over maintenance since the original author no longer
maintains the project.
 2018-10-05 15:50:30 +02:00
Benjamin Hipple 0b82df8dbe Convert entire mkl package to a fixed-output derivation 2018-10-04 13:16:20 +00:00
Benjamin Hipple ba02a2c371 Add Darwin as a supported platform 2018-10-02 22:53:48 -04:00
Daiderd Jordan 1383c08f2c
Merge branch 'master' into staging-next 2018-10-01 19:42:07 +02:00
R. RyanTM 0e5e4aed06 arpack: 3.5.0 -> 3.6.3 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/arpack/versions
 2018-09-26 11:28:59 +02:00
John Ericson c701d6cb21 Merge remote-tracking branch 'upstream/master' into staging 2018-09-25 14:20:27 -04:00
Will Dietz 8a0a34f766 openblas: try leaving openmp enabled w/musl 2018-09-25 00:08:17 -05:00
Dmitry Vyal 81caec3568 openblas-0.3.1 -> 0.3.3 2018-09-23 09:35:29 +02:00
Frederik Rietdijk 14673d61ed Merge master into staging 2018-09-23 09:33:09 +02:00
Benjamin Hipple d7c1d04af4 mkl: init at 2019.0.117 
This packags the Intel Math Kernel library on x86-64 platforms, which is a
dependency for many data science and machine learning packages.

Upstream, Intel provides proprietary binary RPMs with a permissive
redistribution license. These have been repackaged in both Debian and Anaconda,
so we are not the first distribution to redistribute.
 2018-09-22 15:28:39 -04:00
Orivej Desh f0c0e2acc6 htslib: 1.7 -> 1.9 2018-09-21 22:42:28 +00:00
John Ericson 7319013ea1 Merge remote-tracking branch 'upstream/master' into staging 2018-09-18 16:55:42 -04:00
Christopher Ostrouchov 9ef31b2f96 papi: init at 5.6.0 (#46619) 
papi is a high resolution performance counter.
 2018-09-13 23:35:06 +02:00
Christopher Ostrouchov e34a9fff1f scalapack: init at 2.0.2 (#46610) 
Added scalapack with flexibility to choose blas, lapack, and mpi
implementation.
 2018-09-13 21:27:47 +02:00
Uli Baum 79d9145469 parmetis: set license to unfree 
generic unfree license fits best
 2018-09-13 21:10:40 +02:00
Christopher Ostrouchov 3c2a74719a parmetis: init at 4.0.3 (#46615) 2018-09-13 21:02:17 +02:00
Daiderd Jordan 89e52157c8
Merge pull request #46584 from LnL7/darwin-broken-a 
broken darwin packages (a)
 2018-09-13 00:05:42 +02:00
Josef Kemetmüller d726c0ff1d scs: Fix darwin build 
Additionally we make the unit-test deterministic by specifying a seed
instead of using something random.
 2018-09-12 20:58:26 +02:00
Daiderd Jordan f1542f612b
atlas: mark broken on darwin 
Started to fail since 3.10.3.

    /private/tmp/nix-build-atlas-3.10.3.drv-0/ATLAS/build/bin/ATLrun.sh: line 4: 31119 Segmentation fault: 11  $atldir/$*
    make[3]: *** [Makefile:1695: ssanity_test] Error 139

/cc ZHF #45961
 2018-09-12 20:50:54 +02:00
Timo Kaufmann 408eacbc89 openblas: fix pkg-config alias name 
Turns out the filename is important. It should be `cblas`, not
`openblas-cblas`.
 2018-09-03 23:57:45 +02:00
Robert Schütz 93550cbddf Merge branch 'master' into staging-next 2018-08-31 17:32:48 +02:00
John Ericson 2c2f1e37d4 reewide: Purge all uses stdenv.system and top-level system 
It is deprecated and will be removed after 18.09.
 2018-08-30 17:20:32 -04:00
Robert Schütz a9780a095b Merge branch 'master' into staging-next 2018-08-30 21:56:13 +02:00
Jan Tojnar c1e53166ad
Revert "sympow: don't use placeholder" 
This reverts commit bae15c811f.
 2018-08-30 18:18:30 +02:00
Timo Kaufmann c614c15f93
Merge pull request #45257 from timokau/openblas-pc 
openblas: add pkg-config aliases
 2018-08-26 20:13:19 +02:00
Benjamin Hipple 291de70ed6 scs: init at 2.0.2 (#45294) 2018-08-23 23:26:41 +02:00
Timo Kaufmann 26d5d030fe openblas: add pkg-config aliases 2018-08-21 16:39:57 +02:00
Vladimír Čunát 153a19df05
Merge branch 'master' into staging-next 
Hydra: ?compare=1474536
 2018-08-20 09:15:33 +02:00
Timo Kaufmann 8014c7f186
Merge pull request #45013 from jbaum98/fflas-ffpack_darwin 
fflas-ffpack: Add darwin support
 2018-08-19 16:24:52 +02:00
Jake Waksbaum 8374400cec fflas-ffpack: Add darwin support 2018-08-18 20:28:06 +00:00
Benjamin Hipple 65bb0b23b9 Add platforms.all 2018-08-18 12:11:06 -04:00
Benjamin Hipple 460029cf94 ecos: init at 2.0.6 2018-08-18 03:38:50 +00:00
Vladimír Čunát 14aa936ec5
Merge branch 'staging-next' into staging 2018-08-17 20:53:27 +02:00
Vladimír Čunát cbabebcc2e
Merge branch 'master' into staging-next 
Hydra: ?compare=1473892
 2018-08-17 13:45:21 +02:00
Sarah Brofeldt 692c02ff4b
Merge pull request #44993 from bcdarwin/MIRTK 
mirtk: init at 2.0.0
 2018-08-16 10:51:12 +02:00
Jake Waksbaum c0c854da95 zn_poly: Add darwin support 2018-08-14 00:49:42 -04:00
Ben Darwin 0adc6f4d8f mirtk: init at 2.0.0 2018-08-13 15:55:04 -04:00
Vladimír Čunát ded9a4b1aa
Merge branch 'staging-next' into staging 
Commits from master, conflict resolutions, etc.
 2018-08-13 20:57:50 +02:00
Vladimír Čunát 00df25ee57
Merge branch 'master' into staging-next 
Hydra: ?compare=1472947
 2018-08-12 10:33:41 +02:00
Jan Malakhovski b2563a55b7 nifticlib: disable tests 2018-08-11 09:35:38 +00:00
Jake Waksbaum 6385e5ffda lcalc: Add darwin support (#44850) 2018-08-10 09:53:52 +02:00
Frederik Rietdijk d9fa74ba78 Merge master into staging 2018-08-09 18:28:15 +02:00
Timo Kaufmann aabc55e154 libhomfly: init at 1.02r5 
libhomfly is a new standard package for sage. See
https://trac.sagemath.org/ticket/25705
 2018-08-05 16:50:33 +02:00
Timo Kaufmann 34c2f4150b libbraiding: init at 1.0 
libbraiding is a new standard package for sage. See
https://trac.sagemath.org/ticket/25705
 2018-08-05 16:50:32 +02:00
Timo Kaufmann e550e5d0c7 lcalc: apply c++11 patch 2018-08-04 14:22:29 +02:00
John Ericson db965063b3 treewide: Make configureFlags lists 2018-08-03 17:06:03 -04:00
Frederik Rietdijk ad47d658d1 Merge master into staging-next 2018-07-21 19:43:53 +02:00
Jörg Thalheim 218298b30f
Merge branch 'master' into unused5 2018-07-21 15:41:22 +01:00
volth 52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
volth 6d2857a311 [bot] treewide: remove unused 'inherit' in let blocks 2018-07-20 19:38:19 +00:00
Frederik Rietdijk 8213ff161c Merge master into staging-next 2018-07-19 18:24:24 +02:00
Luke Adams eba8679bc5 cudnn*_cudatoolkit*: use public NVIDIA mirror (#31551) 
* cudnn*_cudatoolkit*: use NVIDIA mirror instead of requireFile

* cudnn_cudatoolkit7: update hash since public mirror is different
 2018-07-18 03:21:57 +00:00
Will Dietz 1b3d8eefe3 openblas: backport another patch, fix crash w/Go and Octave 
Also fixes numpy crashing during tests w/musl.
 2018-07-12 12:03:26 -05:00
Timo Kaufmann d2f0fc1f41 openblas: backport fix 
https://github.com/xianyi/OpenBLAS/issues/1666

Causing test failures in cvxopt and (according to an openblas issue) numpy.
 2018-07-11 22:06:32 +02:00
aszlig c8ed322b04
openblas: 0.3.0 -> 0.3.1 
Since the exposure of the version attribute done in
892a0e8ff4, the OpenBLAS build fails for
i686-linux:

https://nix-cache.s3.amazonaws.com/log/wi79zyfmwdpwx7bm29dzqh4vglx3x550-openblas-0.3.0.drv

According to @edolstra the build slaves of Hydra updated to a new
kernel, which seems to be the real cause for this issue. The latter is
already tracked upstream[1] and a fix[2] is already included in version
0.3.1.

This very update cases 4795 rebuilds across all architectures we
support, so it's still not significant enough to go through staging. In
addition the number of rebuilds doesn't include the amount of builds
that are currently failing.

My original idea was to add a patch just for fixing this on i686-linux
and do the real update via staging, but the amount of rebuilds still is
in an acceptable range IMO and @edolstra agreed on that on IRC.

[1]: https://github.com/xianyi/OpenBLAS/issues/1575
[2]: https://github.com/xianyi/OpenBLAS/pull/1583

Signed-off-by: aszlig <aszlig@nix.build>
Cc: @ttuegel
 2018-07-01 18:46:36 +02:00
Timo Kaufmann 5d78baa37a sympow: actually install datafiles 2018-06-30 01:20:46 +02:00
Timo Kaufmann 082169ab02 fetchurl: add sageupstream mirror 2018-06-30 01:20:44 +02:00
Timo Kaufmann 892a0e8ff4 openblas: expose version attribute 2018-06-30 01:20:44 +02:00
Matthew Bauer 753544ab52
Merge pull request #42471 from r-ryantm/auto-update/openlibm 
openlibm: 0.5.5 -> 0.6.0
 2018-06-28 22:06:11 -04:00
Silvan Mosberger 57bccb3cb8 treewide: http -> https sources (#42676) 
* treewide: http -> https sources

This updates the source urls of all top-level packages from http to
https where possible.

* buildtorrent: fix url and tab -> spaces
 2018-06-28 20:43:35 +02:00
R. RyanTM b9137d6bce openlibm: 0.5.5 -> 0.6.0 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/openlibm/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 0.6.0 with grep in /nix/store/crnh2jiksr0b3sq5v6fc9x7zrrsjgirg-openlibm-0.6.0
- directory tree listing: https://gist.github.com/c287196625881e2d6c72af761704718e
- du listing: https://gist.github.com/ac9a45900fb2ba4ff48120c343677dec
 2018-06-23 18:48:17 -07:00
R. RyanTM 12a554dc31 brial: 1.2.3 -> 1.2.4 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/brial/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 1.2.4 with grep in /nix/store/d80z046q8l3rhi7zwbcxzaydfrqxvzq9-brial-1.2.4
- directory tree listing: https://gist.github.com/73a4fe4d778faacdf1c17f40a83e3884
- du listing: https://gist.github.com/23202c35b020ea0976f7c4ff9e23ca2c
 2018-06-19 16:52:22 -07:00
Vladimír Čunát 31530c185e
Merge a subset of staging (security) 
In particular, this contains Firefox-related and libgcrypt updates.
Other larger rebuilds would apparently need lots of time to catch up
on Hydra, due to nontrivial rebuilds in other branches than staging.
 2018-06-15 08:48:02 +02:00
R. RyanTM cc9fc2bdcd ipopt: 3.12.9 -> 3.12.10 (#41555) 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/ipopt/versions.

These checks were done:

- built on NixOS

- 0 of 0 passed binary check by having a zero exit code.
- 0 of 0 passed binary check by having the new version present in output.
- found 3.12.10 with grep in /nix/store/6748l35g9dz7z77wqwal99ylrhn87liv-ipopt-3.12.10
- directory tree listing: https://gist.github.com/5da4bb4853af0913caca26e8cbc87666
- du listing: https://gist.github.com/c4d8373c7d9a61f39479151fdffa99cb
 2018-06-09 23:33:17 +02:00
Will Dietz 912b58a2c1 openblas: workaround mass-rebuilds 
Thanks for the suggestion:
https://github.com/NixOS/nixpkgs/pull/41639#issuecomment-395509669
 2018-06-07 13:38:08 -05:00
Will Dietz b1d54822e4 openblas: remove patch that's no longer needed (PR merged) 2018-06-07 12:20:08 -05:00
Frederik Rietdijk 4dc7cc8cc7
Merge pull request #41259 from jyp/tf-1.7.1-bin 
python.pkgs.tensorflow: wheel version
 2018-06-07 11:27:39 +02:00
R. RyanTM 9d1d274928 openblas: 0.2.20 -> 0.3.0 (#41054) 2018-06-03 13:23:38 +00:00
Jean-Philippe Bernardy 397c4b7748 cudatoolkit: add 9.0 
This version is a dependency of tensorflow binaries
 2018-05-31 22:21:54 +02:00
Jean-Philippe Bernardy 9e730ee254 renaming cudatoolkit version numbers 2018-05-31 22:21:53 +02:00
Orivej Desh 0159beb89c ns-3: fix build after #28029 2018-05-30 02:37:40 +00:00
Ben Darwin 7a64b0726a bicgl: init at 2017-09-10 2018-05-09 14:05:29 -04:00
Robert Schütz 6e6005c2af
Merge pull request #38794 from timokau/brial-init 
brial: init at 1.2.3
 2018-05-08 08:08:15 +02:00
Timo Kaufmann 8b5ecf9141 brial: init at 1.2.3 2018-05-08 01:27:35 +02:00
Timo Kaufmann ca9ea31ae1 liblapack: 3.4.1 -> 3.8.0 2018-05-06 21:12:01 +02:00
Matthew Justin Bauer 8e6684ca32
Merge pull request #39795 from r-ryantm/auto-update/atlas 
atlas: 3.10.2 -> 3.10.3
 2018-05-04 17:18:23 -05:00
R. RyanTM 24761ef5d4 atlas: 3.10.2 -> 3.10.3 
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools.

This update was made based on information from https://repology.org/metapackage/atlas/versions.

These checks were done:

- built on NixOS
- Warning: no binary found that responded to help or version flags. (This warning appears even if the package isn't expected to have binaries.)
- found 3.10.3 with grep in /nix/store/bgqampvgm3zdncg3206n7qnvyvl0jipj-atlas-3.10.3
- directory tree listing: https://gist.github.com/a7dd287df10b13796423e3c2df0850eb
 2018-04-30 23:08:21 -07:00
Timo Kaufmann a0076a4fb6 rubiks: fix build 2018-04-27 17:53:58 +02:00
Daiderd Jordan bae15c811f
sympow: don't use placeholder 2018-04-26 22:50:36 +02:00
Matthew Justin Bauer 7ebb6212a2
Merge pull request #38805 from timokau/zn_poly-init 
zn_poly: init at 0.9
 2018-04-24 09:28:27 -05:00
Timo Kaufmann 28c023e246 zn_poly: init at 0.9 2018-04-22 20:44:06 +02:00
Timo Kaufmann 0c9aaf0814 rankwidth: init at 0.7 2018-04-22 20:11:49 +02:00
Timo Kaufmann b74e884aab flintqs: init at 1.0 2018-04-21 20:43:56 -05:00
Timo Kaufmann d0d7894f75 rubiks: init at 20070917 2018-04-21 20:42:58 -05:00
Timo Kaufmann 10124a4743 lcalc: init at 1.23 (#38796) 2018-04-21 20:38:40 -05:00
Jörg Thalheim f7785dd61c
Merge branch 'master' into minc_ecosystem 2018-04-21 20:18:27 +01:00
Jörg Thalheim 38d6decac3
Merge pull request #38804 from timokau/sympow-init 
sympow: init at 1.018.1
 2018-04-21 19:46:59 +01:00
Timo Kaufmann f8fbe0f157 sympow: init at 1.018.1 2018-04-20 10:28:44 +02:00
Timo Kaufmann d8e5160b23 planarity: init at 3.0.0.5 (#38800) 2018-04-19 08:43:44 +02:00
Jörg Thalheim be5ad658df
Merge pull request #38971 from knedlsepp/fix-darwin-gpu-stuff 
Fix clblas and libgpuarray on darwin
 2018-04-17 13:58:54 +01:00
Josef Kemetmüller 357d8f600c clblas: Enable darwin build 2018-04-15 12:12:25 +02:00
Robert Schütz 089eefe724
Merge pull request #38795 from timokau/cliquer-init 
cliquer: init at 1.21
 2018-04-14 17:41:11 +02:00
Timo Kaufmann 2c23faa3d8 cliquer: init at 1.21 2018-04-14 10:33:54 +02:00
Timo Kaufmann 7d625f6c08 m4rie: init at 20150908 2018-04-12 13:40:27 +02:00
Robert Schütz 077bf8de4c
Merge pull request #38762 from timokau/m4ri-init 
m4ri: init at 20140914
 2018-04-12 13:26:52 +02:00
Timo Kaufmann 280b421cbb m4ri: init at 20140914 2018-04-12 13:24:20 +02:00
Ben Darwin 1575136ff2 Merge branch 'minc_ecosystem' of github.com:bcdarwin/nixpkgs into minc_ecosystem 2018-04-10 13:35:39 -04:00
Ben Darwin efb02d3c00 elastix: 4.8 -> 4.9.0 2018-04-10 13:34:29 -04:00
Ben Darwin 12fa2f9fd3 metadata fixes: EBTKS, MNI::Perllib, Text::Format 2018-04-10 00:53:55 -04:00
Ben Darwin c1488921a0 oobicpl: init at 2016-03-02 2018-04-09 18:07:52 -04:00
Ben Darwin d094f52112 fix EBTKS version naming 2018-04-09 18:07:15 -04:00
Ben Darwin c9db4cabc8 bicpl: init at 2017-09-10 2018-04-09 18:07:15 -04:00
Ben Darwin cf2aac6a04 address license/version issues for PR #29782 2018-04-09 18:06:54 -04:00
Ben Darwin e7d447ce2c EBTKS: init at 1.6.50 (develop branch) 2018-04-09 18:06:33 -04:00