mirror of
https://github.com/SebastianWendel/nixpkgs.git
synced 2024-11-06 10:16:44 +01:00
108 lines
2.1 KiB
Nix
108 lines
2.1 KiB
Nix
{ lib
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, python
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, buildPythonPackage
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, fetchpatch
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, fetchPypi
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, isPyPy
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, R
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, rWrapper
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, rPackages
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, pcre
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, lzma
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, bzip2
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, zlib
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, icu
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, ipython
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, jinja2
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, pytz
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, pandas
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, numpy
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, cffi
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, tzlocal
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, simplegeneric
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, pytest
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, extraRPackages ? []
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}:
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buildPythonPackage rec {
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version = "3.2.6";
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pname = "rpy2";
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disabled = isPyPy;
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src = fetchPypi {
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inherit version pname;
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sha256 = "1p990cqx3p2pd1rc9wn66m56wahaq8dlr88frz49vb7nv4zw4a8q";
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};
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buildInputs = [
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R
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pcre
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lzma
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bzip2
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zlib
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icu
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# is in the upstream `requires` although it shouldn't be -- this is easier than patching it away
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pytest
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] ++ (with rPackages; [
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# packages expected by the test framework
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ggplot2
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dplyr
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RSQLite
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broom
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DBI
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dbplyr
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hexbin
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lme4
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tidyr
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]) ++ extraRPackages ++ rWrapper.recommendedPackages;
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checkPhase = ''
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pytest
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'';
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nativeBuildInputs = [
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R # needed at setup time to detect R_HOME (alternatively set R_HOME explicitly)
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];
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patches = [
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# R_LIBS_SITE is used by the nix r package to point to the installed R libraries.
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# This patch sets R_LIBS_SITE when rpy2 is imported.
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./rpy2-3.x-r-libs-site.patch
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# pandas 1.x compatibility, already merged upstream
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# https://github.com/rpy2/rpy2/issues/636
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(fetchpatch {
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name = "pandas-1.x.patch";
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url = "https://github.com/rpy2/rpy2/commit/fbd060e364b70012e8d26cc74df04ee53f769379.patch";
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sha256 = "19rdqydwjmqg25ibmsbx7lggrr9fsyjn283zgvz1wj4iyfjwp1za";
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})
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];
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postPatch = ''
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substituteInPlace 'rpy2/rinterface_lib/embedded.py' --replace '@NIX_R_LIBS_SITE@' "$R_LIBS_SITE"
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'';
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propagatedBuildInputs = [
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ipython
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jinja2
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pytz
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pandas
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numpy
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cffi
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tzlocal
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simplegeneric
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];
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checkInputs = [
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pytest
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];
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meta = {
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homepage = "http://rpy.sourceforge.net/rpy2";
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description = "Python interface to R";
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license = lib.licenses.gpl2Plus;
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platforms = lib.platforms.unix;
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maintainers = with lib.maintainers; [ joelmo ];
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};
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}
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