Sergei Trofimovich 8147fb683c samtools: pull upstream fix for ncurses-6.3 ... Without the fix build on ncurses-6.3 fails as: bam_tview_curses.c:88:5: error: format not a string literal and no format arguments [-Werror=format-security] 88 | mvprintw(y,x,str); | ^~~~~~~~		2021-11-26 13:02:05 +00:00
..
ants	treewide: avoid use of lib.optional with list in inputs	2021-10-04 13:02:42 -04:00
aragorn
bayescan
bcftools	bcftools: 1.13 -> 1.14	2021-10-29 02:49:14 +00:00
bedops	bedops: 2.4.39 -> 2.4.40	2021-07-23 01:02:40 +00:00
bedtools
bftools
blast	blast: 2.11.0 -> 2.12.0	2021-09-15 15:33:44 +00:00
bowtie	bowtie: 1.3.0 -> 1.3.1	2021-09-15 07:35:44 +00:00
bowtie2	Merge pull request #111691 from jbedo/bowtie2	2021-08-07 04:03:47 +03:00
bppsuite
bwa
cd-hit	perlPackages.ImageMagick: rename from perlPackages.PerlMagick	2021-08-02 20:05:00 +03:00
clustal-omega
cmtk	pkgs/applications: rename name to pname&version part 2	2021-11-07 14:53:06 +01:00
conglomerate
dcm2niix	dcm2niix: 1.0.20210317 -> 1.0.20211006	2021-10-29 09:34:20 +00:00
deeptools
delly	delly: 0.8.7 -> 0.9.1	2021-11-25 21:19:48 +11:00
diamond	pkgs/applications: rename name to pname&version part 2	2021-11-07 14:53:06 +01:00
ecopcr	pkgs/applications: rename name to pname&version part 2	2021-11-07 14:53:06 +01:00
eggnog-mapper
emboss	pkgs/applications: rename name to pname&version part 2	2021-11-07 14:53:06 +01:00
est-sfs	est-sfs: fix darwin build	2021-05-15 12:10:05 +02:00
exonerate
EZminc
fastp	fastp: 0.22.0 -> 0.23.1	2021-10-19 21:09:05 +11:00
freebayes
hisat2
hmmer	hmmer: restrict platforms to x86_64	2021-11-20 19:17:57 +00:00
igv
inormalize
itsx
iv	pkgs/applications: rename name to pname&version part 2	2021-11-07 14:53:06 +01:00
kallisto
kent
kssd
last	last: 1179 -> 1256	2021-10-19 13:23:14 +11:00
lumpy
MACS2
macse	treewide: convert phases that contain ":" to dont* = true (#130500)	2021-07-18 23:42:48 +02:00
manta
megahit
meme-suite
messer-slim
migrate
minc-tools
minc-widgets
minia
minimap2	minimap2: 2.17 -> 2.22	2021-08-14 15:55:35 +00:00
mni_autoreg
mosdepth	mosdepth: convert to buildNimPackage	2021-09-05 11:20:02 +02:00
mrbayes	mrbayes: 3.2.7 -> 3.2.7a	2021-07-27 14:30:23 +02:00
mrtrix
muscle
N3
ncbi-tools
neuron	treewide: ensure pre/post phase hooks are strings	2021-08-20 19:08:42 -04:00
niftyreg
niftyseg
obitools	obitools3: removed useless python restriction	2021-11-08 07:51:48 +01:00
octopus	octopus: 0.7.3 -> 0.7.4	2021-05-11 08:46:00 +10:00
paml
picard-tools	picard-tools: 2.26.3 -> 2.26.4	2021-11-03 19:57:00 +00:00
platypus
plink-ng
poretools
prodigal
quast
raxml
sambamba	sambamba 0.8.0 -> 0.8.1	2021-08-31 12:37:49 +03:00
samblaster	samblaster: fix darwin build	2021-05-18 13:41:51 +02:00
samtools	samtools: pull upstream fix for ncurses-6.3	2021-11-26 13:02:05 +00:00
seaview
snpeff
somatic-sniper
sortmerna
spades	SPAdes: 3.15.2 -> 3.15.3	2021-08-15 11:12:42 +03:00
stacks	Merge pull request #135516 from bzizou/stacks	2021-08-26 03:50:48 +02:00
star	star: 2.7.8a -> 2.7.9a	2021-09-24 10:37:28 +08:00
strelka
sumatools
svaba
tebreak
trimal
truvari	truvari: 2.0.2 -> 2.1.1 (#126839)	2021-06-15 22:14:20 +02:00
varscan	varscan: deprecate phases	2021-08-03 00:04:16 +02:00
vcftools
whisper
xenomapper