mirror of
https://github.com/SebastianWendel/nixpkgs.git
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ff1a94e523
The nixpkgs-unstable channel's programs.sqlite was used to identify packages producing exactly one binary, and these automatically added to their package definitions wherever possible.
58 lines
1.1 KiB
Nix
58 lines
1.1 KiB
Nix
{ lib
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, buildPythonPackage
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, fetchPypi
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, importlib-metadata
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, nose
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, numpy
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, setuptools
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, setuptools-scm
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, six
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, glibcLocales
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, pytestCheckHook
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}:
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buildPythonPackage rec {
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pname = "pyfaidx";
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version = "0.8.1.1";
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format = "pyproject";
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src = fetchPypi {
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inherit pname version;
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hash = "sha256-bwSCNSYZ8sxWADyiIyG9sNB2S2VnlbweQGKx+psIaGs=";
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};
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nativeBuildInputs = [
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setuptools
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setuptools-scm
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];
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propagatedBuildInputs = [
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importlib-metadata
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six
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];
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nativeCheckInputs = [
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glibcLocales
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nose
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numpy
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pytestCheckHook
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];
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disabledTestPaths = [
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# FileNotFoundError: [Errno 2] No such file or directory: 'data/genes.fasta.gz'
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"tests/test_Fasta_bgzip.py"
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];
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pythonImportsCheck = [
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"pyfaidx"
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];
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meta = with lib; {
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homepage = "https://github.com/mdshw5/pyfaidx";
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description = "Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index";
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mainProgram = "faidx";
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license = licenses.bsd3;
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maintainers = with maintainers; [ jbedo ];
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};
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}
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