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Merge pull request #79778 from jbedo/delly

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delly: 0.8.1 -> 0.8.2
This commit is contained in:
Dmitry Kalinkin 2020-02-11 03:54:02 -05:00 committed by GitHub
parent f216b03d5b a8fe9e7aff
commit 5f2a3bef33
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GPG key ID: 4AEE18F83AFDEB23
1 changed files with 13 additions and 4 deletions
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17
pkgs/applications/science/biology/delly/default.nix
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@ -1,16 +1,25 @@
{ stdenv, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }:
{ stdenv, fetchpatch, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }:
stdenv.mkDerivation rec {
let
htslibPatch = fetchpatch {
url = "https://github.com/dellytools/delly/commit/0e5c710b0c5ea790bb39699d4cbd49cf4fb86f14.diff";
sha256 = "09bz1qqvzhdzm99hf9zgrv80kq9jlr1m2mdvx96p2hk5lpnbdl7y";
excludes = [ "src/htslib" ];
};
in stdenv.mkDerivation rec {
pname = "delly";
version = "0.8.1";
version = "0.8.2";
src = fetchFromGitHub {
owner = "dellytools";
repo = pname;
rev = "v${version}";
sha256 = "18gm86j1g1k4z1cjv2m5v9rsl1xqs2w3dhwcsnzx2mhkrvmlc4i1";
sha256 = "14bkmixz7737xj192ww96s3a20zc7xs7r04db8avw3ggi3i1s1cs";
};
patches = [ htslibPatch ];
buildInputs = [ zlib htslib bzip2 lzma ncurses boost ];
EBROOTHTSLIB = htslib;