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Author SHA1 Message Date
Profpatsch 4a7f99d55d treewide: with stdenv.lib; in meta -> with lib; 
Part of: https://github.com/NixOS/nixpkgs/issues/108938

meta = with stdenv.lib;

is a widely used pattern. We want to slowly remove
the `stdenv.lib` indirection and encourage people
to use `lib` directly. Thus let’s start with the meta
field.

This used a rewriting script to mostly automatically
replace all occurances of this pattern, and add the
`lib` argument to the package header if it doesn’t
exist yet.

The script in its current form is available at
https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix
 2021-01-11 10:38:22 +01:00
Nikolay Korotkiy c0575fe0ef
geogebra: 5-0-609-0 → 5-0-620-0, geogebra6: 6-0-609-0 → 6-0-620-0 2021-01-10 20:19:43 +03:00
github-actions[bot] ecebf82121
Merge master into staging-next 2021-01-08 12:29:36 +00:00
Dyazz 8cdefb6995 qalculate-gtk: 3.15.0 -> 3.16.0 2021-01-08 08:43:39 +01:00
Jan Tojnar f19eb635b4
Merge branch 'master' into staging-next 
b04fc593e7 seems to have accidentally changed mkDerivation function for dfilemanager and solarus-quest-editor so I have reverted that here.
 2021-01-07 13:04:31 +01:00
Сухарик 4746e1717f
sympy: 1.6.2 -> 1.7.1 (#107663) 
* sympy: 1.6.2 -> 1.7.1

* sage: adapt tests to sympy 1.7

Co-authored-by: Mauricio Collares <mauricio@collares.org>
 2021-01-06 17:10:30 +00:00
Ben Siraphob 3ae5e6ce03 treewide: remove enableParallelBuilding = true if using cmake 2021-01-03 18:37:40 +07:00
Maximilian Bosch e7d1be840c
treewide: remove maintainership of ma27 from a few packages 
Those are packages I don't use anymore for a longer time and I therefore
don't think that listing me as maintainer is a good idea. If those
should be removed now, I'd be fine with that.

SuperSandro2000 will take care of a few packages[1].

[1] https://github.com/NixOS/nixpkgs/pull/108126#pullrequestreview-560599381
 2021-01-01 19:48:01 +01:00
Pavol Rusnak 1017eb06b1
Merge pull request #101227 from herberteuler/fix/mathematica-12.1.1-opencv4 
mathematica: use opencv4
 2020-12-29 23:41:09 +01:00
freezeboy 3c89e637e8 bcal: 1.9 -> 2.2 2020-12-27 17:52:28 +01:00
FliegendeWurst e49c1a0027
mathematica: 12.1.1 -> 12.2.0 (#107309) 2020-12-21 12:55:28 -05:00
Mauricio Collares 8100c5a44b sage: 8.9 -> 9.2 fixups 2020-12-15 16:51:42 -03:00
Mauricio Collares 8b8cae779f pari: update tarball location, since it moved 2020-12-15 16:46:43 -03:00
Mauricio Collares 4058e45736 nauty: update tarball sha256 
The old `nauty` tarball is currently accessible at
https://distfiles.macports.org/nauty/nauty27r1.tar.gz. The diff is a
single line in genbg.c:

-    SUMMARY(&nout,t2-t1);
+    SUMMARY(nout,t2-t1);
 2020-12-15 16:46:43 -03:00
Mauricio Collares cf6364bed2 pynac: import patch to avoid deprecation warnings on python3.8 2020-12-14 19:24:19 -03:00
Mauricio Collares 5df948d4cc giac: 1.5.0-21 -> 1.5.0-87 2020-12-14 19:24:18 -03:00
Masanori Ogino 5c4136daf7 sage: 8.9 -> 9.2 2020-12-14 19:24:18 -03:00
Sandro 30cdc8be48
Merge pull request #105650 from r-ryantm/auto-update/gretl 
gretl: 2020b -> 2020e
 2020-12-02 20:22:27 +01:00
R. RyanTM cf89444f1e gmsh: 4.7.0 -> 4.7.1 2020-12-02 05:50:47 +00:00
R. RyanTM f9a694106b gretl: 2020b -> 2020e 2020-12-02 04:45:07 +00:00
Sandro 2c0389680c
Merge pull request #90075 from dmrauh/add/gretl 
gretl: init at 2020b
 2020-11-28 22:10:05 +01:00
Dominik Michael Rauh 5f10cd5e0b
gretl: init at 2020b 2020-11-28 21:37:30 +01:00
Sandro ec421ca248
Merge pull request #100532 from piegamesde/fix-desktopitems 
treewide: Fix broken desktop files and mark packages as broken
 2020-11-27 22:27:59 +01:00
Sandro b08b773f24
Merge pull request #101807 from cheriimoya/pspp 
pspp 1.2.0 -> 1.4.1
 2020-11-27 00:35:16 +01:00
Gabriel Ebner 56ffa7a9e4
Merge pull request #105055 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 3.14.0 -> 3.15.0
 2020-11-26 19:04:24 +01:00
R. RyanTM 8c1f644cc7 qalculate-gtk: 3.14.0 -> 3.15.0 2020-11-26 17:48:20 +00:00
Graham Christensen bc49a0815a
utillinux: rename to util-linux 2020-11-24 12:42:06 -05:00
Sandro b3f5ff2005
Merge pull request #103703 from r-ryantm/auto-update/gmsh 
gmsh: 4.6.0 -> 4.7.0
 2020-11-24 01:57:36 +01:00
Martin Lavoie 30afa507a3 pynac: use python3 instead of python2 2020-11-20 20:46:43 +01:00
Ben Gamari 7263f7c433
mathematica: Prefer building locally (#100856) 
There is little benefit to copying a 4GB tarball over the network,
just to perform an I/O-bound operation and then copy the
multi-gigabyte result back.
 2020-11-19 19:42:22 -05:00
Timo Kaufmann b7319d2d35 maintainers: add raskin to the sage team 
https://github.com/NixOS/nixpkgs/pull/104083#issuecomment-729168625
 2020-11-18 21:29:24 +01:00
Timo Kaufmann ff8338343b maintainers: create sage team 
Maintaining all the packages whose updates might break some aspect of
sage.

For reference:
https://github.com/NixOS/nixpkgs/pull/103810#issuecomment-727536510
 2020-11-18 21:27:37 +01:00
R. RyanTM 3457f85820 gp2c: 0.0.11pl4 -> 0.0.12 2020-11-13 14:37:53 +00:00
R. RyanTM a36f37b778 gmsh: 4.6.0 -> 4.7.0 2020-11-13 14:19:59 +00:00
R. RyanTM 3664e4929f qalculate-gtk: 3.13.0 -> 3.14.0 2020-11-10 01:49:59 +00:00
Masanori Ogino 88de0d7354
maxima: 5.42.2 -> 5.44.0 (#102861) 
Reference: https://sourceforge.net/p/maxima/code/ci/master/tree/ChangeLog-5.43.md
Reference: https://sourceforge.net/p/maxima/code/ci/master/tree/ChangeLog-5.44.md
Signed-off-by: Masanori Ogino <167209+omasanori@users.noreply.github.com>
 2020-11-08 19:29:53 -05:00
R. RyanTM 036cec187c ginac: 1.7.9 -> 1.8.0 2020-11-01 17:19:05 -08:00
Maximilian Bosch 952dc5c7ff
Merge pull request #101421 from sikmir/geogebra 
geogebra: 5-0-593-0 -> 5-0-609-0, geogebra6: 6-0-600-0 -> 6-0-609-0
 2020-10-30 23:39:37 +01:00
Ben Siraphob db74029e3e treewide: remove package names from prefix of descriptions 2020-10-27 09:15:07 -07:00
Max Hausch 8fb91897f4
pspp 1.2.0 -> 1.4.1 2020-10-27 01:10:37 +01:00
Masanori Ogino 40fb3ed6dc maxima: remove 5.41.0 
It had been kept for SageMath, but it uses the default version nowadays
and this version is not referenced in nixpkgs.

Signed-off-by: Masanori Ogino <167209+omasanori@users.noreply.github.com>
 2020-10-27 06:09:12 +09:00
Maximilian Bosch 61fa498994
Merge pull request #101646 from luc65r/pkg/rofi-calc 
rofi-calc: 1.8 -> 1.9
 2020-10-26 16:36:43 +01:00
Peter Simons 40bc6c8dad
Merge pull request #100393 from matthiasbeyer/update-r 
R: 4.0.2 -> 4.0.3
 2020-10-25 21:57:03 +01:00
Lucas Ransan 2436e41916 rofi-calc: 1.8 -> 1.9 2020-10-25 14:31:57 +01:00
Nikolay Korotkiy a2472ebfb1
geogebra: 5-0-593-0 -> 5-0-609-0, geogebra6: 6-0-600-0 -> 6-0-609-0 2020-10-23 19:25:11 +03:00
Guanpeng Xu efe94c085b mathematica: use opencv4 
The default opencv2 is marked broken at 5e68d203, and it is suggested
there that the current release is 4.x.
 2020-10-21 08:36:54 +08:00
Masanori Ogino 096ef94717 gfan: fix build failures with cddlib v0.94l 
It fixes https://github.com/NixOS/nixpkgs/issues/100622.

Signed-off-by: Masanori Ogino <167209+omasanori@users.noreply.github.com>
 2020-10-19 10:29:01 +09:00
Ben Siraphob 683a87dbeb treewide: remove periods from end of package descriptions 2020-10-17 08:22:31 -07:00
piegames e14a359896 treewide: Fix broken desktop files and mark packages as broken 
This fixes all packages that are failed `nixpkgs-review` in #91790.
Packages that were broken prior to that PR were marked as broken.
Packages that failed because of #75729 were fixed.
 2020-10-15 15:14:51 +02:00
Matthias Beyer ea4a13e573 R: 4.0.2 -> 4.0.3 
Signed-off-by: Matthias Beyer <mail@beyermatthias.de>
 2020-10-13 10:05:15 +02:00
AndersonTorres 1331d642e0 zegrapher: init at 3.1.1 2020-10-12 19:31:34 -03:00
AndersonTorres 69c14beb04 gp2c: 0.0.11pl3 -> 0.0.11pl4 2020-10-12 04:07:03 -03:00
AndersonTorres 781753db45 pari: 2.11.3 -> 2.11.4 2020-10-12 04:07:03 -03:00
Wulfsta 77143fc628 mathematica: fix libQt errors 2020-10-11 15:49:11 +02:00
Gabriel Ebner 9fadca2bcc qalculate-gtk: 3.12.1 -> 3.13.0 2020-10-04 14:53:10 +02:00
Gabriel Ebner 1c576d0b37 sage: use jdk8 2020-09-19 14:22:43 +02:00
freezeboy 3fc3fd14cf lp_solve: fix buildCommand some binaries moved 2020-09-13 03:51:51 +02:00
voidless 721da4b5e2 geogebra6: 6-0-598-0 -> 6-0-600-0 2020-09-04 11:49:44 +02:00
John Ericson 1965a241fc
Merge pull request #61019 from volth/gcc.arch-amd 
platform.gcc.arch: support for AMD CPUs
 2020-09-01 22:31:16 -04:00
worldofpeace 20252b3cb6 nasc: typo 2020-08-31 13:53:25 -04:00
worldofpeace 32a9e0eea7 nasc: 0.5.4 -> 0.7.5 
* updates to meson build system
* adapt to complications around libqalculate
* update metadata
* add update script
 2020-08-31 13:50:43 -04:00
R. RyanTM 43114a1751 wxmaxima: 20.04.0 -> 20.06.6 2020-08-31 17:09:33 +02:00
R. RyanTM 73cff3d2c2 R: 4.0.0 -> 4.0.2 2020-08-31 16:57:06 +02:00
R. RyanTM 741b7f7b36 rofi-calc: 1.7 -> 1.8 2020-08-29 06:44:34 +00:00
Henri Menke e1f177fab2
mathematica: 12.1.0 -> 12.1.1 2020-08-24 11:36:59 +12:00
Gabriel Ebner 294ddd8e9f qalculate-gtk: explain pkg-config issue 2020-08-23 11:13:06 +02:00
Gabriel Ebner a3ce3f5931 qalculate-gtk: fix parallel build 2020-08-22 19:06:43 +02:00
Gabriel Ebner 55af730da0
Merge pull request #95999 from gebner/calculix217 
calculix: 2.15 -> 2.17
 2020-08-22 18:26:02 +02:00
Gabriel Ebner 294cd72be3 qalculate-gtk: 3.8.0a -> 3.12.1 2020-08-22 17:14:25 +02:00
Gabriel Ebner 214d7626e1 calculix: 2.15 -> 2.17 2020-08-22 17:12:30 +02:00
voidIess 3cc44ba04e
geogebra 6 : init at 6-0-598-0 (#95422) 
* geogebra 6 : init at 6-0-598-0

since geogebra was ported from java to electron, this is a repacke;
wont want to delete geogebra 5, no darwin package for 6

ran nixpkgs-fmt over the file to cleanly reformat the spacings

Update pkgs/top-level/all-packages.nix

remove a trailing space

Co-authored-by: Tom Smeets <Tom.TSmeets@Gmail.com>

Update pkgs/applications/science/math/geogebra/geogebra_6.nix

Co-authored-by: Tom Smeets <Tom.TSmeets@Gmail.com>

Applied a sugestion for the formating of the lines

fixed a mistake, where the wrong name attribute was used

removed an unnecassary chmod statement

added a downlod link to archive.org

moved geogebra_6.nix to geogebra6.nix

removed unnecesary build inputs statement

* renamed to geogebra6
 2020-08-16 20:02:54 +02:00
volth cf7b63df5b gcc.arch: refactor, move tables under lib/ 2020-08-05 11:18:26 +00:00
Stephen Morgan d9e6338fec geogebra: 5-0-574-0 -> 5-0-593-0 2020-07-24 15:11:42 +10:00
Alyssa Ross 8f5eaa6deb
gfan: fix clang build on non-Darwin 
-fno-guess-branch-probability isn't a Darwin-specific thing, it's a
clang-specific thing.
 2020-07-17 15:30:24 +00:00
R. RyanTM d27df249ee yacas: 1.8.0 -> 1.9.1 2020-07-08 18:25:49 +00:00
R. RyanTM 97c089f2f7 gmsh: 4.5.6 -> 4.6.0 2020-07-03 11:56:48 +00:00
Markus Kowalewski 52f9aebe64
qalculate-gtk: add license 2020-06-27 00:37:44 +02:00
Frederik Rietdijk 08900c0554 Merge master into staging-next 2020-06-04 15:25:54 +02:00
Timo Kaufmann 374016fb1c
Merge pull request #89111 from timokau/gap-cleanup 
gap: cleanup
 2020-06-02 10:55:46 +02:00
Jonathan Ringer 3a4fec8232 mxnet: use blas.provider, fix build 2020-05-28 15:08:47 -07:00
Timo Kaufmann 6579f814cf gap: remove explicit configreFlags 
System gmp is now the default.
 2020-05-28 16:07:38 +02:00
Timo Kaufmann d689f3fe72 gap: add readline support 
Technically optional but strongly recommended from upstream. Replaces
their own implementation for input parsing.
 2020-05-28 16:06:34 +02:00
Timo Kaufmann f15c816584 gap: use https for the homepage 2020-05-28 15:58:41 +02:00
Timo Kaufmann 9e245a0878 gap: fix comment typo 2020-05-28 15:57:50 +02:00
Timo Kaufmann e2e45e163c gap: remove m4 dependency 
No longer necessary, since the build system was significantly overhauled
/ replaced by Max Horn.
 2020-05-28 15:55:07 +02:00
Timo Kaufmann c269b51c38 gap: move to new source URL 
GAP downloads moved to a new subdomain. The old one still redirects, but
the new one is the "source of truth" so we should switch to that.
 2020-05-28 15:53:56 +02:00
Timo Kaufmann a4c76b970c gap: use the check target for install checks 
As suggested by Max Horn.

This exists since gap 4.10 and will only run the install checks once
while also exiting with an appropriate exit code. This new check has
uncovered some test failures, which are harmless and actually disabled
in a future gap release. The error-detection code for the previous test
target was probably broken.
 2020-05-28 15:50:46 +02:00
Timo Kaufmann b74991703a palp: fix hash 
The file was modified for the second time now. I'll try to contact
upstream about this. Maybe 2.11 is not actually a finished product yet.
 2020-05-28 00:20:30 +02:00
Mario Rodas d30b7592c4
Merge pull request #88363 from r-ryantm/auto-update/clp 
clp: 1.17.5 -> 1.17.6
 2020-05-23 00:31:57 -05:00
Timo Kaufmann b811d52b9c
Merge pull request #88428 from timokau/nauty-27r1 
nauty: 26r12 -> 27r1
 2020-05-20 13:22:15 +00:00
Timo Kaufmann d0e171395a nauty: 26r12 -> 27r1 
Changes: http://pallini.di.uniroma1.it/changes24-27.txt
 2020-05-20 14:59:46 +02:00
Timo Kaufmann a276c4485c nauty: add meta.changelog 2020-05-20 14:59:46 +02:00
R. RyanTM d1b7e3f8cc clp: 1.17.5 -> 1.17.6 2020-05-20 10:04:01 +00:00
Timo Kaufmann aae9af9632 palp: fix hash 
It looks like the upstream tarball was changed since I updated palp 3
days ago. Hopefully that won't happen again.
 2020-05-19 17:50:43 +02:00
Timo Kaufmann d65850e975 palp: 2.1 -> 2.11 
According to the homepage[1]:

> Small change in Mori.h for compatibility with gcc_10 (thanks to J.
  Puydt) [May 15, 2020].

Disabling the strictoverflow seems to be no longer necessary (I'm
relying on the check phase here).

[1] http://hep.itp.tuwien.ac.at/~kreuzer/CY/CYpalp.html
 2020-05-16 15:07:57 +02:00
Timo Kaufmann 51de320353 palp: add meta.changelog 2020-05-16 15:05:45 +02:00
R. RyanTM e07dfd38f1 wxmaxima: 20.02.4 -> 20.04.0 2020-05-12 22:12:53 -07:00
albakham 0c0f353d62 rofi-calc: 1.6 -> 1.7 2020-05-08 22:12:49 -04:00
Doron Behar 53effac040 mathematica: explicitly use opencv2 2020-05-05 13:48:55 +03:00
R. RyanTM a930faab93 mxnet: 1.4.1 -> 1.6.0 2020-05-02 10:17:38 +02:00
Timo Kaufmann 7866440f12
Merge pull request #86274 from samlich/sage-matrix-double-dense 
sage: fix doctest matrix_double_dense is_unitary
 2020-05-01 22:12:10 +00:00
Peter Simons 205e4dffd5
Merge pull request #86081 from jabranham/update-r 
R: 3.6.3 --> 4.0.0 & update packages
 2020-05-01 20:25:14 +02:00
samlich c0bd938e5c
sage: fix doctest matrix_double_dense is_unitary 2020-05-01 16:04:23 +00:00
Jan Tojnar e89e2edc73
libusb-compat-0_1: rename from libusb 2020-04-28 05:33:41 +02:00
Alex Branham 8ce6552d64
R: 3.6.3 -> 4.0.0 2020-04-26 17:06:07 -04:00
Matthew Bauer ff2f2644f8 blas,lapack: use isILP64 instead of is64bit 
This is a better name since we have multiple 64-bit things that could
be referred to.

LP64  : integer=32, long=64, pointer=64
ILP64 : integer=64, long=64, pointer=64
 2020-04-20 16:02:43 -05:00
Matthew Bauer 97fc083fd4 giac: broken on 64-bit blas 2020-04-17 16:24:31 -05:00
Matthew Bauer 1c8aba8334 treewide: use blas and lapack 
This makes packages use lapack and blas, which can wrap different
BLAS/LAPACK implementations.

treewide: cleanup from blas/lapack changes

A few issues in the original treewide:

- can’t assume blas64 is a bool
- unused commented code
 2020-04-17 16:24:09 -05:00
worldofpeace 433ea74af1 nasc: fix build 2020-04-15 17:19:47 -04:00
AndersonTorres 3b91c3de8f gp2c: 0.0.11pl2 -> 0.0.11pl3 2020-04-15 00:45:28 -03:00
Benjamin Hipple 17a1bf5dbd
Merge pull request #85069 from r-ryantm/auto-update/ginac 
ginac: 1.7.8 -> 1.7.9
 2020-04-12 11:18:43 -04:00
R. RyanTM 9b5aad0644 ginac: 1.7.8 -> 1.7.9 2020-04-12 12:04:38 +00:00
Michael Reilly 84cf00f980
treewide: Per RFC45, remove all unquoted URLs 2020-04-10 17:54:53 +01:00
Timo Kaufmann b72fd98789
Merge pull request #84666 from jonringer/repofy-palp 
palp: correct metadata for repology
 2020-04-08 11:44:33 +00:00
Gabriel Ebner e71c0d80a1
Merge pull request #84583 from r-ryantm/auto-update/qalculate-gtk 
qalculate-gtk: 3.8.0 -> 3.8.0a
 2020-04-08 11:01:33 +02:00
Jonathan Ringer f89b76d9db
palp: correct metadata for repology 2020-04-07 14:08:03 -07:00
R. RyanTM 67ea5a0081 qalculate-gtk: 3.8.0 -> 3.8.0a 2020-04-07 10:29:32 +00:00
R. RyanTM b43965986f gmsh: 4.5.4 -> 4.5.6 2020-04-05 19:28:16 +00:00
Timo Kaufmann 83fd89945d
Merge pull request #79661 from luc65r/pkg/cemu 
cemu: init at 1.3
 2020-03-31 15:17:33 +00:00
luc65r 8edd400bfb
rofi-calc: init at 1.6 (#83136) 
Also:
* maintainers: add albakhamj
* maintainers: add luc65r
* rofi: add plugins argument to wrapper

Co-authored-by: Maciej Krüger <mkg20001@gmail.com>
 2020-03-30 01:18:56 +02:00
Guanpeng Xu d2702c915f mathematica: 12.0.0 -> 12.1.0 2020-03-29 14:38:33 +02:00
Frederik Rietdijk 5175c35a99
Merge pull request #81611 from r-ryantm/auto-update/R 
R: 3.6.2 -> 3.6.3
 2020-03-14 14:29:05 +01:00
wucke13 c24b9a57c4 getdp: 3.0.4 -> 3.3.0 2020-03-13 04:10:20 +00:00
Maximilian Bosch 76821e6f43
geogebra: 5-0-573-0 -> 5-0-574-0 2020-03-12 18:12:57 +01:00
Timo Kaufmann ba589e24c9 sage: patch for pari 2.11.3 2020-03-12 12:24:41 +01:00
Timo Kaufmann c4ab541443 pari: backport bug fix 
https://trac.sagemath.org/ticket/29313#comment:4
 2020-03-12 12:24:35 +01:00
xaverdh 5ac085c3cc
wxmaxima: 18.02.0 -> 20.02.4 (#82323) 
The commit description is 18.02.0 -> 20.02.4, because in the last version bump (1c6a193b3e), the version string was changed, but the hash was not.

Co-authored-by: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
 2020-03-11 12:07:53 -04:00
Timo Kaufmann 1a6b1fb32a symmetrica: add timokau to maintainers 2020-03-10 18:10:28 +01:00
Timo Kaufmann 0c875c28c6 symmetrica: 2.0 -> 3.0.1 
This switches to the sagemath fork, since the original upstream is no
longer maintained and sagemath has effectively maintained symmetrica
through patches for a while now. The update fixes one bug in particular
that has caused failures in the sagemath test suite:

https://github.com/NixOS/nixpkgs/issues/81449
https://trac.sagemath.org/ticket/15312
https://trac.sagemath.org/ticket/29061

Regarding the licensing change:

7cf91b3800
 2020-03-10 18:10:25 +01:00
Timo Kaufmann e05e219b31
Merge pull request #82240 from timokau/sage-docutils-0.15-fix 
sage: fix test suite with docutils 0.15
 2020-03-10 15:25:22 +00:00
Timo Kaufmann 7133577405 sage: fix test suite with docutils 0.15 
The better way to fix this would be to backport the upstream sphinx
patch:

faedcc48cc

Unfortunately it doesn't apply cleanly and isn't worth the effort
of backporting. Let's hope we can switch to python3 sage and the recent
sphinx version that comes with it before this becomes a problem.
 2020-03-10 13:15:41 +01:00
Timo Kaufmann 63ed2bf3c3
Merge pull request #81950 from r-ryantm/auto-update/pari 
pari: 2.11.2 -> 2.11.3
 2020-03-09 17:31:14 +00:00
R. RyanTM e6f5bb8dc4 qalculate-gtk: 3.7.0 -> 3.8.0 2020-03-08 00:14:22 +00:00
R. RyanTM 6528554396 pari: 2.11.2 -> 2.11.3 2020-03-07 02:43:40 +00:00
R. RyanTM 9974067129 gmsh: 4.5.2 -> 4.5.4 2020-03-05 00:20:08 +00:00
R. RyanTM faa5c3bde3 R: 3.6.2 -> 3.6.3 2020-03-03 11:34:22 +00:00
Timo Kaufmann f4dbf4402b
Merge pull request #80759 from Thra11/fix-r 
Fix R
 2020-02-23 23:48:21 +00:00
Tom Hall ae9e09a2e1 R: fix build on aarch64 by removing a failing test 
I believe this test is currently incorrect on aarch64 and expects a
warning about loss of precision with much smaller numbers than the
platform's long doubles can handle.
 2020-02-22 13:17:40 +00:00
Maximilian Bosch 7bdc103ac8
geogebra: 5-0-570-0 -> 5-0-573-0 2020-02-20 03:09:06 +01:00
Tom Hall 4e5aeca90b R: Enable java support on all platforms 2020-02-19 22:57:41 +00:00
luc65r 94c60990fc cemu: init at 1.3 2020-02-10 19:26:25 +01:00
R. RyanTM e988c072be clp: 1.17.3 -> 1.17.5 2020-02-10 13:24:22 +01:00
Frederik Rietdijk 03755ed59a Merge master into staging-next 2020-02-09 09:17:51 +01:00
R. RyanTM 7c58b6437b gmsh: 4.5.1 -> 4.5.2 2020-02-08 07:25:27 +00:00
Maximilian Bosch abefd4f78a
pspp: 1.0.1 -> 1.2.0, fix build w/glibc-2.30 2020-01-30 15:19:44 +01:00
Frederik Rietdijk dce0ca29d9 Merge master into staging-next 2020-01-28 10:46:13 +01:00
Gabriel Ebner 8161fe21e0 qalculate-gtk: 3.6.0 -> 3.7.0 2020-01-26 18:43:29 +01:00
Anders Kaseorg 3cd8ce3bce treewide: Fix unsafe concatenation of $LD_LIBRARY_PATH 
Naive concatenation of $LD_LIBRARY_PATH can result in an empty
colon-delimited segment; this tells glibc to load libraries from the
current directory, which is definitely wrong, and may be a security
vulnerability if the current directory is untrusted.  (See #67234, for
example.)  Fix this throughout the tree.

Signed-off-by: Anders Kaseorg <andersk@mit.edu>
 2020-01-15 09:47:03 +01:00
Frederik Rietdijk 2a88c3c302 Merge staging-next into staging 2020-01-15 09:23:28 +01:00
Will Dietz afe905246d nota: init at 1.0 
Fixes #77590.
 2020-01-14 15:16:21 -08:00
Luka Blaskovic 991a7e041f pcalc: build with bison3 2020-01-13 21:35:19 +00:00
markuskowa 2aecfca22c
Merge pull request #77083 from r-ryantm/auto-update/gmsh 
gmsh: 4.4.1 -> 4.5.1
 2020-01-09 12:27:11 +01:00
Maximilian Bosch 8a6baaecb5
geogebra: 5-0-569-0 -> 5-0-570-0 2020-01-07 23:26:31 +01:00
R. RyanTM 66156e04d5 gmsh: 4.4.1 -> 4.5.1 2020-01-06 06:33:28 -08:00
Robin Gloster 95526382be
polymake: fix for structured attrs 2019-12-31 00:49:42 +01:00
Robin Gloster 5f2b92e3ec
treewide: NIX_*_COMPILE -> string 2019-12-31 00:13:29 +01:00
Merijn Broeren 133103d709
treewide: replace make/build/configure/patchFlags with nix lists 2019-12-30 12:58:11 +01:00
Timo Kaufmann 8ac53ed0b1 python.pkgs.sympy: 1.4 -> 1.5 
Sage needs some doctest changes. The patch was included upstream.
Modelled after https://trac.sagemath.org/ticket/28911.
 2019-12-26 11:46:42 +01:00
Alex Branham 7af84afa2a R: 3.6.1 -> 3.6.2 
Closes https://github.com/NixOS/nixpkgs/pull/75587.
 2019-12-16 18:56:49 +01:00
Timo Kaufmann 6a800927bb pybrial: 1.2.3 -> 1.2.5, directly use the brial src 
The pybrial package is a bit awkward. It doesn't have its own top-level
attribute, since it has a cyclic dependency with sage. That's one of the
reasons why it rarely gets updated. Its distributed along with brial, so
its best to keep the versions synchronized. The easiest way to do this
is to just re-use the source of brial.
 2019-12-13 20:29:16 +01:00
Gabriel Ebner 5f1790101f Merge branch 'auto-update/libqalculate' 2019-12-10 17:38:25 +01:00
Gabriel Ebner 12d9b6929c qalculate-gtk: 3.5.0 -> 3.6.0 2019-12-10 17:34:29 +01:00
Maximilian Bosch e16df73d30
geogebra: 5-0-560-0 -> 5-0-569-0 2019-12-08 03:50:02 +01:00
Jonathan Ringer 9dc8e77e4e giac-with-xcas: fix build 
remove libGLU_combined package and replace with libGL and libGLU
 2019-12-07 16:58:50 -08:00
Timo Kaufmann 5c9000014e
Merge pull request #74945 from timokau/sage-no-timeout 
sage: disable test timeout
 2019-12-04 09:55:34 +01:00
Timo Kaufmann e371a02b6c sage: disable test timeout 
I already did that once in 359bf7f1e3.
That change mysteriously got lost somehow (presumably in some merge
commit).

Nix has its own timeout settings, so there is no risk in running
forever. At the same time, some tests can exceed the default timeout
(30minutes per file for --long tests) when run on many weak cores (like
the aarch64 community builder or some hydra builders).
 2019-12-01 13:23:54 +01:00
Jan Tojnar 8cbc862b83
dconf: move to top-level 2019-12-01 01:01:40 +01:00
Frederik Rietdijk 5f8b0d7d99 Merge staging-next into staging 2019-11-19 14:53:29 +01:00
adisbladis c9d8624ccd
treewide: Get rid of libGLU_combined 2019-11-18 20:10:43 +00:00
c0bw3b 9367367dfd Treewide: fix URL permanent redirects 
Permanent redirects on homepages and/or source URLs
as reported by Repology
 2019-11-16 01:41:23 +01:00
Guanpeng Xu 66d5277375 mathematica: fix version issue with zlib (#73425) 2019-11-14 17:19:30 -05:00
Matthew Bauer 551d9f632d
Merge pull request #72954 from nkpart/nkpart/R-darwin-enable-tcltk 
R: enable tcltk on darwin
 2019-11-07 16:49:46 -05:00
Timo Kaufmann afb9887dbd sage: backport fix for threejs r109 2019-11-06 14:40:16 +01:00
Timo Kaufmann f64885b9ca sage: fix pkgconfig errors in tests 
python.pkgs.pkgconfig raises an exception on missing packages since
version 1.5.0. Previously those errors were just silently ignored. That
worked fine, since the packages are only missing at runtime (when they
are not really needed) but present at buildtime.

Since this fails the tests now, we just add the packages to
PKG_CONFIG_PATH at runtime. This does not add additional runtime
dependencies. Still, it would be nicer if the sage testssuite would not
test the buildsystem at runtime in the first place.

The breakage was originally caused by the pkgconfig update in
1efa71616f.
 2019-11-06 14:40:13 +01:00
Timo Kaufmann da7ec1c139 sage: ignore werkzeug immutable dict deprecation 2019-11-06 14:40:13 +01:00
Timo Kaufmann f85ce834ce sage: ignore deprecation warnings in rst2sws 
Needs to be fixed upstream (by werkzeug, twisted). Doesn't impact the
functionality and the tests are soon to be removed with the py3 update
anyway.
 2019-11-06 14:40:13 +01:00
Timo Kaufmann af480796c9 sage: ignore cmp deprecation in sagenb 2019-11-06 14:40:13 +01:00
Nick Partridge 22d0ccbd2d R: enable tcltk on darwin 2019-11-06 13:14:11 +10:00
R. RyanTM b7f151df70 yacas: 1.6.1 -> 1.8.0 2019-11-04 23:49:42 -08:00
Gabriel Ebner a4f0bfdc87 qalculate-gtk: 3.4.0 -> 3.5.0 2019-11-02 10:54:10 +01:00
Timo Kaufmann f7c1e8f274
Merge pull request #72328 from timokau/sage-ignore-cmp-deprecation 
sage: ignore attrs deprecation warning
 2019-10-30 23:14:07 +01:00
Timo Kaufmann 32827e35d8 sage: ignore attrs deprecation warning 
cmp is deprecated since attrs 19.2.0:
http://www.attrs.org/en/19.2.0/changelog.html

The deprecation warning breaks the doctests.  Fortunately they have a
rather long deprecation window, so we can just wait until upstream(s)
fix this.
 2019-10-30 22:27:00 +01:00
Niklas Hambüchen edbe2d8145 R: Add static argument. 
R's autoconf does not use the normal configure flags for that.
 2019-10-30 11:44:02 +01:00
R. RyanTM d93659ffa0 nauty: 26r11 -> 26r12 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/nauty/versions
 2019-10-22 10:14:36 -07:00
R. RyanTM bf30d5d6f6 ginac: 1.7.7 -> 1.7.8 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ginac/versions
 2019-10-21 15:21:33 -07:00
Renaud a12f3ebee7
Merge pull request #69488 from r-ryantm/auto-update/clp 
clp: 1.17.2 -> 1.17.3
 2019-10-12 14:15:31 +02:00
worldofpeace bdb851ee2d pantheon: use latest vala 
elementary OS's ecosystem is curated around Ubuntu's LTS releases.
This means the development platform for their curated applications
always includes a LTS version of vala (in 18.04 it's 0.40).
Because of how vala development works it suspect some of these
applications to have serious issues if complied with the latest vala.
However in the past year or so, for Pantheon at least, I don't think
their applications will have much issues with latest vala, and if there
is I don't think they'd be difficult to fix. In this single regard they've
become more responsive since their preferred language is vala.

As for the curated applications I have less of this confidence in.
So I'd have to be accept less applications, but that's something
I'm willing to compromise on. And this is easily reversible or
could be done on a per-application basis. And nix already makes
this trivial.
 2019-10-09 22:47:37 -04:00
Ben Justus Bals 911d5d59ec
Geogebra: 5.0.535 -> 5.0.560 2019-10-09 11:59:46 +02:00
Nikolay Amiantov de171ba0c6 cntk: partially unbreak 
* Use GCC 7 to unbreak the build;
* Mark CUDA build as broken due to cub incompatibility.
 2019-10-05 16:18:20 +03:00
Orivej Desh 3dc70841d3 cbc: 2.10.2 -> 2.10.3 2019-10-04 05:17:48 +00:00
Timo Kaufmann 7a7e9c1b27
Merge pull request #64193 from timokau/sage-8.9 
sage: 8.8 -> 8.9
 2019-09-30 11:13:46 +00:00
Timo Kaufmann d9176bee70 sage: 8.9.rc1 -> 8.9 2019-09-30 11:10:10 +02:00
Vladimír Čunát 217cf982c7
Merge branch 'master' into staging-next 2019-09-27 22:13:02 +02:00
Marek Mahut 5c116916d6
Merge pull request #69575 from r-ryantm/auto-update/ginac 
ginac: 1.7.6 -> 1.7.7
 2019-09-27 22:04:49 +02:00
R. RyanTM b7f156625e ginac: 1.7.6 -> 1.7.7 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ginac/versions
 2019-09-26 12:09:29 -07:00
Timo Kaufmann 4a863fa567
Merge pull request #69519 from r-ryantm/auto-update/eclib 
eclib: 20190226 -> 20190909
 2019-09-26 17:27:41 +00:00
R. RyanTM faf9a73e2f eclib: 20190226 -> 20190909 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eclib/versions

Relevant sage upstream ticket: https://trac.sagemath.org/ticket/28472
 2019-09-26 16:41:50 +02:00
R. RyanTM 7653ff45cb clp: 1.17.2 -> 1.17.3 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/clp/versions
 2019-09-26 01:49:26 -07:00
Jörg Thalheim 9a1b767a55
treewide: remove empty buildInputs 2019-09-26 09:17:23 +01:00
Timo Kaufmann 78741fc409 sage: 8.9.rc0 -> 8.9.rc1 2019-09-25 10:19:04 +02:00
Timo Kaufmann 1797c9c295 sage: 8.9.beta9 -> 8.9.rc0 
Sage now by default expects the lcalc library to be named Lfunction
(instead of libLfunction). This could be changed by an environment
variable (https://trac.sagemath.org/ticket/28224), but various distros
seem to agree on this standard
(https://groups.google.com/forum/#!topic/sage-packaging/xvh55IxHTZg) so
it's best just to follow it. The old standard was set by sage anyway and
sage is the only consumer of lcalc in nixpkgs.
 2019-09-24 17:51:09 +02:00
Vladimír Čunát eab41878ac
Merge branch 'master' into staging-next 2019-09-24 08:14:34 +02:00
Timo Kaufmann ba9e5a2785 Merge remote-tracking branch 'upstream/master' into sage-8.9 2019-09-23 23:58:37 +02:00
Timo Kaufmann 995a728684 pynac: 0.7.25 -> 0.7.26 2019-09-23 22:08:23 +02:00
Timo Kaufmann 5aba3be6f9 sage: 8.9.beta8 -> 8.9.beta9 2019-09-23 18:50:59 +02:00
Timo Kaufmann 8593d468ae Merge remote-tracking branch 'upstream/master' into sage-8.9 2019-09-23 17:11:15 +02:00
Timo Kaufmann cbe12344ca sage: add pager to environment 
Temporary fixup while waiting for an upstream fix.
 2019-09-23 15:14:43 +02:00
Vladimír Čunát 22a216849b
Re-Revert "Merge branch 'staging-next'" 
This reverts commit f8a8fc6c7c.
 2019-09-22 09:38:09 +02:00
Vladimír Čunát f8a8fc6c7c
Revert "Merge branch 'staging-next'" 
This reverts commit 41af38f372, reversing
changes made to f0fec244ca.

Let's delay this.  We have some serious regressions.
 2019-09-21 20:05:09 +02:00
Vladimír Čunát 41af38f372
Merge branch 'staging-next' 2019-09-21 13:14:09 +02:00
Will Dietz 6429696f43
libqalculate,qalculate-gtk: 3.3.0 -> 3.4.0 2019-09-18 17:05:59 -05:00
Vladimír Čunát b6c6e1f9e8
Merge branch 'master' into staging-next 2019-09-15 13:18:54 +02:00
Vladimír Čunát 991c0e1618
treewide: mark packages as buildable on darwin (PR #45364) 
vcunat amended the commit a bit; see the PR for details/discussion.
 2019-09-15 10:50:08 +02:00
Miguel Madrid Mencía 148c82e07e
maintainer: mimadrid: update github username and personal data 2019-09-14 12:15:46 +02:00
Izorkin 329a88efa7 treewide: replace mysql.connector-c to libmysqlclient 2019-09-09 15:55:34 +03:00
volth 7b8fb5c06c treewide: remove redundant quotes 2019-09-08 23:38:31 +00:00
Timo Kaufmann 84578046aa sage: 8.9.beta7 -> 8.9.beta8 2019-09-03 15:34:28 +02:00
Frederik Rietdijk 98ef78326d Merge staging-next into staging 2019-08-31 18:07:33 +02:00
Frederik Rietdijk 96e5474329 Merge master into staging-next 2019-08-31 18:04:31 +02:00
Alyssa Ross 1da1a7a479 pari: 2.11.1 -> 2.11.2 2019-08-31 13:33:00 +00:00
volth 08f68313a4 treewide: remove redundant rec 2019-08-28 11:07:32 +00:00
volth 35d68ef143 treewide: remove redundant quotes 2019-08-26 21:40:19 +00:00
Timo Kaufmann 071a4db33e sage: 8.9.beta6 -> 8.9.beta7 2019-08-19 00:16:06 +02:00
Timo Kaufmann e8436f5e23 sage: 8.9.beta5 -> 8.9.beta6 2019-08-18 21:52:27 +02:00
volth c814d72b51 treewide: name -> pname 2019-08-17 10:54:38 +00:00
Frederik Rietdijk fe9a3e3e63 Merge staging-next into staging 2019-08-17 09:39:23 +02:00
Timo Kaufmann 192197dc6c
Merge pull request #65802 from timokau/sage-transient-debug 
sage: add patch to debug transient issue
 2019-08-17 00:33:05 +02:00
Timo Kaufmann 41bb319462 sage: avoid running out of memory during tests 2019-08-16 23:50:55 +02:00
Matthew Bauer ae15177ade calc: don’t include glibc headers in closure 2019-08-15 23:31:14 +09:00
volth 46420bbaa3 treewide: name -> pname (easy cases) (#66585) 
treewide replacement of

stdenv.mkDerivation rec {
  name = "*-${version}";
  version = "*";

to pname
 2019-08-15 13:41:18 +01:00
Gabriel Ebner 0a1e131077 gmsh: opencascade support 2019-08-14 19:09:40 +02:00
Gabriel Ebner f91904a889 calculix: init at 2.15 2019-08-14 19:09:40 +02:00
Timo Kaufmann f6265b0da5 sage: default to long tests again 
Changed by accident in 5e58c5f900.
 2019-08-09 18:42:14 +02:00
Timo Kaufmann 9ef44b3431 sage: move sympow cache to .sage 2019-08-09 17:45:14 +02:00
Timo Kaufmann 5e58c5f900 sympow: 1.018.1 -> 2.023.4 
Maintenance taken over by debian package maintainer jgmbenoit:
https://trac.sagemath.org/ticket/3360#comment:17

This moves sympow to his fork, since there is no offical
version-controlled source repository from the original author and they
do not seem to maintain sympow anymore. We had already accumulated quite
some patches from debian, who have effectively maintained sympow for a
while now.
 2019-08-09 17:45:08 +02:00
Timo Kaufmann ddd3faf08e sage: 8.9.beta4 -> 8.9.beta5 2019-08-07 15:33:15 +02:00
Gabriel Ebner ef3b016545 Merge branch 'qalc330' 2019-08-06 09:08:58 +02:00
Gabriel Ebner ca1895ace3 qalculate-gtk: 3.2.0 -> 3.3.0 2019-08-06 09:03:45 +02:00
R. RyanTM 5f3787932f gmsh: 4.4.0 -> 4.4.1 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
 2019-08-04 04:16:21 -07:00
Timo Kaufmann f6a1fe64eb sage: 8.9.beta3 -> 8.9.beta4 2019-08-02 23:50:45 +02:00
Timo Kaufmann 69d9700c61 sage: add list of past test failures 2019-08-02 18:09:18 +02:00
Timo Kaufmann dac4719e0b sage: add patch to debug transient issue 2019-08-02 18:09:15 +02:00
Timo Kaufmann b884552c35 sage: 8.9.beta2 -> 8.9.beta3 2019-08-02 01:03:33 +02:00
Orivej Desh b5d1d50aa9 google-gflags: move to aliases.nix 
google-gflags were renamed to gflags in 2012:
https://github.com/gflags/gflags/#25-january-2012

gflags.name will be updated in staging.
 2019-07-25 09:18:32 +00:00
Guanpeng Xu 6988b0b929 mathematica: 11.3.0 -> 12.0.0 (#65031) 
* mathematica: archive version 11

* mathematica: 11.3.0 -> 12.0.0
 2019-07-23 22:23:00 +02:00
Robin Gloster dbfcfe495e
Merge pull request #65183 from r-ryantm/auto-update/scilab-bin 
scilab-bin: 6.0.1 -> 6.0.2
 2019-07-22 17:49:05 +00:00
R. RyanTM 7251e3a2af scilab-bin: 6.0.1 -> 6.0.2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/scilab-bin/versions
 2019-07-20 09:33:18 -07:00
avitex 44324bdd7c caffe: add python package requirements 2019-07-20 13:17:17 +02:00
avitex 955ed925e5 caffe: fix python build 2019-07-20 13:17:17 +02:00
R. RyanTM 3ef3712313 gp2c: 0.0.11pl1 -> 0.0.11pl2 
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gp2c/versions
 2019-07-15 08:14:30 -07:00