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Author SHA1 Message Date
Jonas Heinrich b8e0c9b652
Merge pull request #183253 from r-ryantm/auto-update/angsd 
angsd: 0.937 -> 0.938
 2022-08-24 10:35:05 +02:00
Jonas Heinrich c199cfabff
Merge pull request #184694 from r-ryantm/auto-update/SPAdes 
SPAdes: 3.15.4 -> 3.15.5
 2022-08-23 20:21:42 +02:00
Jonas Heinrich 5cb64f6046
Merge pull request #186958 from r-ryantm/auto-update/igv 
igv: 2.13.2 -> 2.14.0
 2022-08-21 21:11:49 +02:00
R. Ryantm 49f4071f30 eggnog-mapper: 2.1.7 -> 2.1.9 2022-08-21 12:45:21 +00:00
Jonas Heinrich 8508d5decf
Merge pull request #183724 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.26.11 -> 2.27.4
 2022-08-21 10:03:42 +02:00
R. Ryantm 98d1f4c35d bcftools: 1.15 -> 1.16 2022-08-18 18:44:42 +00:00
R. Ryantm f4c3ff2d7f igv: 2.13.2 -> 2.14.0 2022-08-16 13:24:02 +00:00
R. Ryantm c37112d2d0 messer-slim: 3.7.1 -> 4.0 2022-08-14 14:11:37 +00:00
Mario Rodas 0cab4c8f8a
Merge pull request #183012 from bcdarwin/update-mni-autoreg 
mni_autoreg: unstable-2017-09-22 -> unstable-2022-05-20
 2022-08-13 01:05:26 -05:00
Mario Rodas 6aeb44c32e
Merge pull request #185211 from r-ryantm/auto-update/delly 
delly: 1.0.3 -> 1.1.3
 2022-08-13 00:41:48 -05:00
kilianar 0442ab82e0 igv: 2.8.13 -> 2.13.2 
- https://software.broadinstitute.org/software/igv/2.9.x
- https://software.broadinstitute.org/software/igv/2.10.x
- https://software.broadinstitute.org/software/igv/2.11.x
- https://software.broadinstitute.org/software/igv/2.12.x
- https://software.broadinstitute.org/software/igv/2.13.x
 2022-08-07 17:53:06 +02:00
Bobby Rong 934c6c9a95
Merge pull request #184334 from r-ryantm/auto-update/mafft 
mafft: 7.490 -> 7.505
 2022-08-07 16:18:05 +08:00
R. Ryantm 8b7c09d0e6 delly: 1.0.3 -> 1.1.3 2022-08-05 08:58:15 +00:00
Sandro e9984bc607
Merge pull request #182705 from luispedro/no_test_samtools_on_cross_compile 2022-08-02 23:20:38 +02:00
Luis Pedro Coelho 5877d8e072 samtools: Fix cross-compilation 
Tests require bgzip which comes from the htslib package.

This did not cause problems prior to
41485e7337 as tests were not run in
cross-compilation.
 2022-08-02 17:52:50 +02:00
Sandro e76aa82431
Merge pull request #184598 from wegank/treewide-fix-platforms 2022-08-02 15:57:56 +02:00
R. Ryantm 921b81745d SPAdes: 3.15.4 -> 3.15.5 2022-08-02 02:26:56 +00:00
Weijia Wang 278086eddb treewide: fix platforms 2022-08-01 18:33:27 +02:00
R. Ryantm b2bbba02ba mafft: 7.490 -> 7.505 2022-07-31 20:32:57 +00:00
R. Ryantm e0a9011556 last: 1268 -> 1406 2022-07-31 16:58:20 +00:00
R. Ryantm 9338d8c9b7 picard-tools: 2.26.11 -> 2.27.4 2022-07-29 16:12:10 +00:00
R. Ryantm 8c0e56fc14 angsd: 0.937 -> 0.938 2022-07-28 07:50:11 +00:00
Justin Bedő 9e80da74b0
Merge pull request #182028 from jbedo/bedops 
bedops: 2.4.40 -> 2.4.41
 2022-07-28 09:14:23 +10:00
Ben Darwin 125da19866 mni_autoreg: unstable-2017-02-22 -> unstable-2022-05-20 2022-07-26 16:03:12 -04:00
natsukium cf0dc604a6
dssp: init at 4.0.5 2022-07-19 12:17:34 +09:00
Justin Bedo 99fb9abfaa
bedops: 2.4.40 -> 2.4.41 2022-07-19 09:09:52 +10:00
Lassulus 01853c3bcc
Merge pull request #174547 from r-ryantm/auto-update/delly 
delly: 0.9.1 -> 1.0.3
 2022-07-16 10:49:50 +02:00
Pascal Wittmann 26ddf3454a
Merge pull request #138255 from natsukium/mafft/init 
mafft: init at 7.487
 2022-07-16 00:54:59 +02:00
thyol 0d6e3afdba diamond: update metadata 2022-07-13 12:33:33 +02:00
thyol 55853ae096 maintainers: add thyol 2022-07-13 12:30:44 +02:00
thyol 4e79b5e370 diamond: remove patch 2022-07-13 11:58:39 +02:00
thyol 5e765ecc68 diamond: 0.8.36 -> 2.0.15 2022-07-13 11:58:02 +02:00
R. Ryantm 5ea1c721e1 delly: 0.9.1 -> 1.0.3 2022-07-07 22:10:48 +00:00
ajs124 3b5f125515 maintainers: remove metabar 
no github account + only commit is 78c052e91a
 2022-06-29 00:52:13 +02:00
Robert Scott 466c2e342a treewide/applications: add sourceType binaryNativeCode for many packages 2022-06-23 18:38:19 +01:00
Robert Scott 444d3a825a treewide/python-modules: add sourceProvenance for several packages 2022-06-20 09:43:10 +02:00
Sandro Jäckel 0f14467d44
MACS2: mark broken 2022-06-06 11:46:22 -07:00
Robert Scott 3b6bc4b69c treewide: set sourceProvenance for packages containing downloaded jars 
these are the easily identifiable cases and will not be comprehensive
 2022-06-04 19:47:57 +01:00
Sergei Trofimovich fd48676596
Merge pull request #175259 from trofi/workaround-fno-common-for-svaba 
svaba: add -fcommon workaround
 2022-06-03 05:59:16 +00:00
ckie 958fcfb4fa
Merge pull request #175477 from bzizou/astral 
astral: init at 5.7.1
 2022-05-31 14:55:37 +03:00
Bruno Bzeznik 376897ced3 astral: init at 5.7.1 2022-05-31 09:03:24 +02:00
Rick van Schijndel 433701147a
treewide: pkgs/applications: mark broken for aarch64-linux 2022-05-30 13:42:58 +02:00
Bruno Bzeznik c15d568d0b iqtree: init at 2.2.0.4 2022-05-30 10:53:40 +02:00
Rick van Schijndel 37c633f7ae treewide: pkgs/applications: mark broken for darwin 2022-05-29 10:56:04 +02:00
Sergei Trofimovich 2f60be03bb svaba: add -fcommon workaround 
Workaround build failure on -fno-common toolchains like upstream
gcc-10. Otherwise build fails as:

    ld: ./libfml.a(rle.o):/build/source/SeqLib/fermi-lite/rle.h:33: multiple definition of
      `rle_auxtab'; ./libfml.a(misc.o):/build/source/SeqLib/fermi-lite/rle.h:33: first defined here
 2022-05-29 08:07:23 +01:00
Rick van Schijndel 331e26b6ec
Merge pull request #173867 from trofi/fix-fno-common-for-kssd 
kssd: pull upstream fix for -fno-common tollchains
 2022-05-28 20:39:38 +02:00
Sandro 3b9985498d
Merge pull request #174036 from trofi/workaround-fno-common-for-paml 
paml: add -fcommon workaround
 2022-05-25 00:35:00 +02:00
Sergei Trofimovich 8cba3775d8 paml: add -fcommon workaround 
Workaround build failure on -fno-common toolchains like upstream
gcc-10. Otherwise build fails as:

    ld: /build/ccKomtcd.o:(.bss+0x4544): multiple definition of `SeqTypes';
      /build/ccx7EsgU.o:(.bss+0x2a0dfdc): first defined here
 2022-05-22 20:23:12 +01:00
Sergei Trofimovich 94a5ae4f91 mni_autoreg: pull upstream workaround for -fno-common toolchains 
Without the change build fails on upstream gcc-10 as:

    ld: lib_minctracc.a(minctracclib.c.o):(.bss+0x78): multiple definition of
      `prog_name'; CMakeFiles/xfm2param.dir/Extra_progs/xfm2param.c.o:(.bss+0x18): first defined here
 2022-05-22 14:37:30 +01:00
Bobby Rong 3b468e68b7
Merge pull request #173017 from trofi/workaround-fno-common-for-freebayes 
freebayes: add -fcommon workaround
 2022-05-22 13:39:14 +08:00
Sergei Trofimovich eb0590ec3d kssd: pull upstream fix for -fno-common tollchains 
Without the change build fails on upstream gcc-10 as:

    ld: ccD2iWhk.o:(.bss+0x8): multiple definition of `domain';
      ccgA4lYl.o:(.bss+0x8): first defined here
    ld: ccD2iWhk.o:(.bss+0x0): multiple definition of `long_domain';
      ccgA4lYl.o:(.bss+0x0): first defined here
 2022-05-21 11:22:53 +01:00
Ben Darwin 5cf446f41b ezminc: mark broken 
Package refuses to build with current GCC (11), but building with older
GCC causes error linking libminc and I don't want to pin a bunch of
deps.

A newer version is available upstream but it only works with ITK 5.0
(see https://github.com/BIC-MNI/EZminc/issues/15),
but we have 4.x and 5.2.x in tree and I'm reluctant to add 5.0 just for
one package (even ITK 4.x is only used by ants and ezminc and should be
removed as soon as ants is upgraded).
 2022-05-17 10:24:07 -07:00
Sergei Trofimovich deaab56289 freebayes: add -fcommon workaround 
Workaround build failure on -fno-common toolchains like upstream
gcc-10. Otherwise build fails as:

    ld: foomatic_rip-options.o:/build/foomatic-filters-4.0.17/options.c:49: multiple definition of `cupsfilter';
      foomatic_rip-foomaticrip.o:/build/foomatic-filters-4.0.17/foomaticrip.c:158: first defined here
 2022-05-14 13:19:17 +01:00
Thomas Gerbet 44c1590f1f bayescan: fix the build 
Moved back to C++14 to avoid the new errors and warnings introduced with
C++17.
 2022-05-13 12:00:08 +02:00
Theodore Ni 81046b393b
bowtie: fix build on case insensitive file systems 
Add a patch that removes the current source directory from the include
search path during compilation so that #include <version> does not end
up picking the VERSION source code file.
 2022-05-11 03:20:03 -05:00
Theodore Ni 802a8416b6
bowtie: add arm64 patch to build on M1 Macs 
This does not fix the build on Macs, but it brings the build on M1 Macs
to parity with non-M1 Macs.
 2022-05-11 02:36:56 -05:00
Sergei Trofimovich 428045f39b bwa: pull upstream fix for -fno-common tollchains 
Without the change build fails on -fno-common toolchains like upstream
gcc-10 as:

    $ nix build -L --impure --expr 'with import ./. {}; bwa.overrideAttrs (oa: {   NIX_CFLAGS_COMPILE = (oa.NIX_CFLAGS_COMPILE or "") + "-fno-common"; })'
    ...
    ld: ./libbwa.a(rope.o):/build/bwa-0.7.17/rle.h:33:
      multiple definition of `rle_auxtab'; ./libbwa.a(bwtindex.o):/build/bwa-0.7.17/rle.h:33: first defined here
    ld: ./libbwa.a(rle.o):/build/bwa-0.7.17/rle.h:33:
      multiple definition of `rle_auxtab'; ./libbwa.a(bwtindex.o):/build/bwa-0.7.17/rle.h:33: first defined here
 2022-05-08 08:56:43 +01:00
Luis Pedro Coelho 596c5e7ea2 Static bwa 
AR needs to be passed specifically on the command line
 2022-05-04 02:20:50 +02:00
Luis Pedro Coelho 4758873378 Static build for samtools 
Curses is not supported (it may be possible to support it)
 2022-05-04 02:16:17 +02:00
Luis Pedro Coelho 0b1c28d5a1 Static build for megahit 2022-05-04 02:13:31 +02:00
Vladimír Čunát c480cc2895
Merge branch 'master' into staging-next-2022-04-23 2022-04-30 23:02:28 +02:00
R. Ryantm a82b1b63c3 blast: 2.12.0 -> 2.13.0 2022-04-29 09:39:10 -05:00
github-actions[bot] 073cad8fd6
Merge master into staging-next 2022-04-25 12:04:02 +00:00
Sandro 2f517412c4
Merge pull request #165477 from rbreslow/dcm2niix-optional-modules 2022-04-25 11:59:49 +02:00
Rocky Breslow d1c3fea7ec
dcm2niix: support usage of suggested Cloudflare zlib 2022-04-18 15:00:45 -04:00
Rocky Breslow 9019ce0106
dcm2niix: add maintainer 
Also, fix grammatical error in long description.
 2022-04-18 15:00:16 -04:00
Ben Siraphob 259fa13d53 treewide: remove nativeBuildInputs that are in stdenv 2022-04-16 21:46:46 +03:00
Fabián Heredia Montiel 8a9d5e296b cmtk: add -std=c++11 to fix build on gcc11 2022-04-15 11:15:30 -05:00
Malo Bourgon 0e802eafad treewide: add meta.mainProgram to many packages 2022-04-14 10:24:01 -07:00
Artturi ebf6f84ea2
Merge pull request #164722 from armeenm/bump-eggnog-mapper 
eggnog-mapper: 1.0.3 -> 2.1.7
 2022-04-10 14:37:21 +03:00
Rocky Breslow 09b7444b82
dcm2niix: add support for configuring optional compile-time modules 
Right now, the dcm2niix package produces a single binary without support for
dcm2niibatch, JPEG-LS, OpenJPEG, or an alternative zlib library. The official
build process for dcm2niix configures all these options (minus batch support). I
was motivated to make these changes so my organization could process JPEG 2000
imagery using the Nix binary.
 2022-04-04 10:41:27 -04:00
ajs124 60f1e6ffe2 ncbi_tools: remove after being marked broken for over two years 
It was marked in commit b9948fedc6 by Robin Gloster on 2017-03-30 (commited on 2017-03-30)
 2022-04-03 16:14:18 +01:00
Ben Siraphob 5187709ff7
Merge pull request #166508 from siraben/automake-buildinputs 2022-03-31 03:15:41 -05:00
Ben Siraphob 21faf9fc29
treewide: move autoconf, automake to nativeBuildInputs 2022-03-30 20:17:24 -05:00
Sandro 1f6bdf4d93
Merge pull request #165458 from rbreslow/add-flywheel-cli 2022-03-29 13:33:54 +02:00
Rocky Breslow 603e9d7b64
flywheel-cli: init at 16.2.0 2022-03-28 15:54:39 -04:00
Felix Buehler 3bc5196252 treewide: rename name to pname&version 2022-03-23 22:55:50 +01:00
Armeen Mahdian 6cfaf0a464 eggnog-mapper: 1.0.3 -> 2.1.7 
https://github.com/eggnogdb/eggnog-mapper/releases
 2022-03-18 10:26:47 -05:00
Bruno Bzeznik 7d62054650 angsd: init at 0.937 2022-03-04 09:17:35 -06:00
Matthew Wakefield e85b65f986
minimap2: enable aarch64 builds (#161169) 
Co-authored-by: Bobby Rong <rjl931189261@126.com>
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-03-04 12:27:29 +01:00
Justin Bedo 89eff15f31
last: 1260 -> 1268 2022-03-02 13:35:56 +11:00
Felix Buehler fe7678ca81 raxml-mpi: remove appendToName to have a consistent package name for repology 2022-02-28 12:46:15 +01:00
Felix Buehler 13dca33cdc neuron-mpi: remove appendToName to have a consistent package name for repology 2022-02-28 12:46:15 +01:00
R. Ryantm 1e7c64aae1 bcftools: 1.14 -> 1.15 2022-02-25 11:12:05 -08:00
R. Ryantm ce9d28cc49 picard-tools: 2.26.10 -> 2.26.11 2022-02-24 17:34:18 +00:00
natsukium 0524e8856b
mafft: 7.487 -> 7.490 2022-02-22 21:35:45 +09:00
Scriptkiddi 4e60a4823b febio-studio: init at 1.6.1 2022-02-21 16:43:36 +01:00
R. RyanTM 94f61e4c82
SPAdes: 3.15.3 -> 3.15.4 
(#158938)
 2022-02-18 00:55:34 +01:00
R. Ryantm 240262f564 messer-slim: 3.7 -> 3.7.1 2022-02-14 00:46:29 +00:00
Justin Bedő 2759d6f8d8
Merge pull request #159675 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.26.9 -> 2.26.10
 2022-02-13 09:53:20 +11:00
Justin Bedő 7ff9c00c4b
Merge pull request #159562 from r-ryantm/auto-update/mosdepth 
mosdepth: 0.3.2 -> 0.3.3
 2022-02-13 09:27:54 +11:00
R. Ryantm 8a4946df2d picard-tools: 2.26.9 -> 2.26.10 2022-02-12 22:20:29 +00:00
R. Ryantm 8bb7bc766f mosdepth: 0.3.2 -> 0.3.3 2022-02-12 14:31:47 +00:00
R. Ryantm 6ca5bb6e20 last: 1256 -> 1260 2022-02-12 02:52:18 +00:00
Renaud 2ddcc2b369 hisat2: update homepage 
and use SPDX 3.0 license identifier
 2022-02-06 15:10:53 +01:00
R. Ryantm d44e044d84 kallisto: 0.46.2 -> 0.48.0 2022-01-31 09:53:54 -08:00
Bruno Bzeznik b6fa4975cf
repseek: init at 9Sep2014 (#148017) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-01-31 14:59:32 +01:00
markuskowa 01f1b41a7d
Merge pull request #156381 from r-ryantm/auto-update/bowtie2 
bowtie2: 2.4.4 -> 2.4.5
 2022-01-29 14:56:23 +01:00
R. RyanTM 8bd7d6d6e0
star: 2.7.9a -> 2.7.10a 
(#155868)
 2022-01-24 19:51:44 +01:00
R. Ryantm ebb9e86bf9 bowtie2: 2.4.4 -> 2.4.5 2022-01-23 22:45:59 +00:00
Mario Rodas 111d7dc831
Merge pull request #156014 from r-ryantm/auto-update/deeptools 
deeptools: 3.5.0 -> 3.5.1
 2022-01-22 23:45:09 -05:00
Justin Bedő c24af4642c
sambamba: 0.8.1 -> 0.8.2 (#155972) 
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
 2022-01-23 04:51:46 +01:00
R. Ryantm 227011af59 deeptools: 3.5.0 -> 3.5.1 2022-01-21 05:36:24 +00:00
Frederik Rietdijk afef6d0e81
Merge pull request #154687 from dotlambda/python-alias 
python,pythonPackages: make aliases
 2022-01-17 09:37:49 +01:00
R. RyanTM 4fa7c297f2
minimap2: 2.23 -> 2.24 
* minimap2: 2.23 -> 2.24 (#153189)

* minimap2: no support for aarch64

Co-authored-by: Renaud <c0bw3b@users.noreply.github.com>
 2022-01-17 08:49:35 +01:00
Robert Schütz d5cceedbd1 python,pythonPackages: make aliases 
Since aliases are disallowed in nixpkgs, this makes usage of Python 2
which is EOL more explicit.
 2022-01-16 18:39:59 +00:00
Robert Schütz 65e959eb9a tebreak: also use python3 for tests 2022-01-16 18:00:59 +00:00
Martin Weinelt 492e5e07c9
lumpy: drop 
Removed because it requires python2 and the upstream repository looks
undermaintained.
 2022-01-16 02:36:23 +01:00
markuskowa 09819d7eff
Merge pull request #152801 from r-ryantm/auto-update/messer-slim 
messer-slim: 3.6 -> 3.7
 2022-01-03 10:50:18 +01:00
R. RyanTM e4992cdd65
stacks: 2.59 -> 2.60 
(#149101)
 2022-01-02 19:23:58 +01:00
Martin Weinelt 4beaf5301d
python3Packages.xenomapper: move to top-level 2022-01-01 02:09:11 +01:00
R. Ryantm 37d2f5cbb4 messer-slim: 3.6 -> 3.7 2021-12-30 20:32:56 +00:00
Bobby Rong 4fdcad0d6b
Merge pull request #149379 from r-ryantm/auto-update/minimap2 
minimap2: 2.22 -> 2.23
 2021-12-27 18:05:04 +08:00
Felix Buehler e578d45c10 diamond: switch to fetchFromGitHub 2021-12-23 19:11:17 +01:00
Felix Buehler 865eee2b26 kssd: switch to fetchFromGitHub 2021-12-23 19:11:17 +01:00
Felix Buehler 2f4a86e7d7 messer-slim: switch to fetchFromGitHub 2021-12-23 19:11:17 +01:00
Felix Buehler e1bd890fb0 niftyseg: switch to fetchFromGitHub 2021-12-23 19:11:17 +01:00
Justin Bedo fa6244b712
picard-tools: 2.26.6 -> 2.26.9 2021-12-22 22:20:36 +11:00
Justin Bedő f6e14b6ada
Merge pull request #150628 from jbedo/subread 
subread: init 2.0.3
 2021-12-15 13:46:45 +11:00
Justin Bedo 6a1f4a51eb
subread: init 2.0.3 2021-12-14 13:30:23 +11:00
R. Ryantm d4a5bdc264 seaview: 5.0.4 -> 5.0.5 2021-12-12 15:59:16 +00:00
R. Ryantm d337b164d6 minimap2: 2.22 -> 2.23 2021-12-07 15:04:36 +00:00
Justin Bedő 711ef56370
Merge pull request #148514 from jbedo/picard 
picard-tools: 2.26.4 -> 2.26.6
 2021-12-05 06:56:25 +11:00
Justin Bedo 17e3b75414
picard-tools: 2.26.4 -> 2.26.6 2021-12-04 07:51:31 +11:00
Justin Bedo 1a768ef4da
genmap: init 1.3.0 2021-12-04 06:51:16 +11:00
Justin Bedo 82aef7957d
fastp: 0.23.1 -> 0.23.2 2021-12-02 08:03:17 +11:00
Vikram Narayanan b1d95dca56 mrtrix: 3.0.2 -> unstable-2021-11-25 
The latest stable version fails to build with latest eigen (> 3).
https://github.com/MRtrix3/mrtrix3/pull/2368
 2021-11-30 21:03:53 -08:00
Sergei Trofimovich 8147fb683c samtools: pull upstream fix for ncurses-6.3 
Without the fix build on ncurses-6.3 fails as:

    bam_tview_curses.c:88:5: error: format not a string literal and no format arguments [-Werror=format-security]
       88 |     mvprintw(y,x,str);
          |     ^~~~~~~~
 2021-11-26 13:02:05 +00:00
Justin Bedo c1eb0dddea
delly: 0.8.7 -> 0.9.1 2021-11-25 21:19:48 +11:00
Robert Scott ec24bab90e hmmer: restrict platforms to x86_64 
technically big-endian powerpc with VMX is also supported, but
on x86, SSE is apparently *required* which means we can't build
a pure i686 version
 2021-11-20 19:17:57 +00:00
Mario Rodas c8fb7191ad
Merge pull request #143541 from r-ryantm/auto-update/bcftools 
bcftools: 1.13 -> 1.14
 2021-11-14 21:14:30 -05:00
Bruno Bzeznik 4e5a245894 obitools3: removed useless python restriction 2021-11-08 07:51:48 +01:00
Felix Buehler b52ab3b712 pkgs/applications: rename name to pname&version part 2 2021-11-07 14:53:06 +01:00
Justin Bedő a5ac0a33a7
Merge pull request #144529 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.26.3 -> 2.26.4
 2021-11-04 07:19:02 +11:00
R. Ryantm 509a8c298f picard-tools: 2.26.3 -> 2.26.4 2021-11-03 19:57:00 +00:00
Bruno Bzeznik 0d9ec2d3f0 obitools3: fix build on aarch64 + formatting 2021-11-03 11:59:05 +02:00
R. Ryantm 6282512ef7 dcm2niix: 1.0.20210317 -> 1.0.20211006 2021-10-29 09:34:20 +00:00
R. Ryantm 5f6bd8187b bcftools: 1.13 -> 1.14 2021-10-29 02:49:14 +00:00
Artturi 493094366b
Merge pull request #142164 from jbedo/last 
last: 1179 -> 1256
 2021-10-22 08:37:19 +03:00
Justin Bedő 4e83abb0cb
Merge pull request #142199 from jbedo/picard 
picard-tools: 2.26.2 -> 2.26.3
 2021-10-22 14:36:28 +11:00
Justin Bedo f120d4daf4
picard-tools: 2.26.2 -> 2.26.3 2021-10-19 21:24:56 +11:00
Justin Bedo 08489c40ab
fastp: 0.22.0 -> 0.23.1 2021-10-19 21:09:05 +11:00
Justin Bedo f7414542d0
last: 1179 -> 1256 2021-10-19 13:23:14 +11:00
Justin Bedo 02a1a2b3c8
samtools: 1.11 -> 1.13 2021-10-12 10:19:36 +11:00
figsoda 3109ff5765 treewide: avoid use of lib.optional with list in inputs 2021-10-04 13:02:42 -04:00
R. RyanTM 5becb56f71
star: 2.7.8a -> 2.7.9a 2021-09-24 10:37:28 +08:00
Bobby Rong c25465873c
Merge pull request #138022 from natsukium/blast/update 
blast: 2.11.0 -> 2.12.0
 2021-09-23 14:48:35 +08:00
Guillaume Girol 4bc83aaffa
Merge pull request #136489 from ehmry/nimPackages 
nimpackages / buildNimPackage
 2021-09-22 18:35:38 +00:00
figsoda 0e575a459e
Merge pull request #137974 from r-ryantm/auto-update/bowtie 
bowtie: 1.3.0 -> 1.3.1
 2021-09-17 22:52:43 -04:00
natsukium ff76ac9156
mafft: init at 7.487 2021-09-17 18:12:51 +09:00